DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Girdin and ccdc88c

DIOPT Version :9

Sequence 1:NP_647780.1 Gene:Girdin / 38385 FlyBaseID:FBgn0283724 Length:1381 Species:Drosophila melanogaster
Sequence 2:XP_002933247.3 Gene:ccdc88c / 100485260 XenbaseID:XB-GENE-1033686 Length:2058 Species:Xenopus tropicalis


Alignment Length:1660 Identity:446/1660 - (26%)
Similarity:731/1660 - (44%) Gaps:372/1660 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IDEFVNSSIISWLESCLP----RAELLAGYTSLLDGHIIHSVWLQIDPEPQN---NPSELNDLNG 69
            :|:|::|.:::|:::..|    ....|..|..|:||..::.:.:||||.|.|   |....|::| 
 Frog     9 MDQFLDSPLVTWVKTFGPCGNENESKLDIYMELVDGVFLNKIMVQIDPRPSNQRVNKHVNNEVN- 72

  Fly    70 KSLSIARAKNFECVVRNLKSFFEEELGQTILV-LPDAFTLGHHPESKNGLEQMKTLLTLLLGAAV 133
                 .|.:|...:||::|::::|.|.|.|:: ||:.|.:...|.:...:|::|.||.|:||.||
 Frog    73 -----LRVQNLTILVRHIKAYYQEVLQQLIVMNLPNVFLISKDPLTGKSMEELKKLLLLMLGCAV 132

  Fly   134 QCPNKELFIARIKELDLETQHAIVGLIKQVTDSHSLV----------LTEDSLERLTPQSMYTHI 188
            ||..||.:|.|||:||:|||..||..|::||.:...|          :..:.|:.|: ::|..|:
 Frog   133 QCDRKEEYIERIKQLDIETQAGIVSHIQEVTHNQENVFDLQWLELPDMAPEELDSLS-RNMALHL 196

  Fly   189 LRLTKERDVMYLKWIDLACVE--TEMTASDNLVECGQGVSVTRSPSNGTATSTPSSSSNSESNHL 251
            .||..|||         .|.|  .::|...:.::.....|..:|.|..|:|:..|..:.....||
 Frog   197 KRLIDERD---------ECKEVIVDLTQERDYLQFQNPPSPLKSSSPDTSTNMVSHLATENKKHL 252

  Fly   252 AVECADLRSKNRKLRQELEEKSENLLELREELDDKKARFDKLRQESQEWFTEAKRASAYRDEVDI 316
            |||.|:.::|.|::|||||||||.||:.:.|:|.......|::||:.:...||:.|..||||:|.
 Frog   253 AVELAESKAKLRRIRQELEEKSELLLDTKHEVDRLNLELQKIKQENFQLAAEARTARTYRDEIDS 317

  Fly   317 LRERAERADRLEVEVQKYREKLGDSDFYKSRVEELREDNRVLLESKEMLEEQLQRYRKRSEHAIS 381
            |:|:|.|.||||.::.:.:|||.|.||||:|::||||||.:|:|:|.||||||...|.|::....
 Frog   318 LKEKASRVDRLENDLARCKEKLHDVDFYKARMDELREDNMILIETKSMLEEQLAAARTRTDKLHE 382

  Fly   382 LESEIIKYKQKINDMALERDVDRSKLEELLEENSQLQLVAR-NLNSTMDLDKSFSE--NEDDCNS 443
            ||.|.::.|.||:|:.|:|..|::::|||||||..|::..: ::|.:..|.....:  ...|.:.
 Frog   383 LEKENLQLKSKIHDLELDRYSDKNRIEELLEENMVLEIAQKQSMNESAQLGWELEQLSRSTDLSD 447

  Fly   444 GDNSLSEQLTNNAQTRALKLELENRRLTAALEQLKESS--FHESTSKMLELEKEKKKLSLKIEQM 506
            ...|...:|...|.::.||||.||:.|...:::|:|:|  ..|...|..|||||.::|:..||.:
 Frog   448 VRKSFVFELNETASSKILKLEKENQSLQNIIQELREASLILEEGNLKGQELEKENQQLNKVIENL 512

  Fly   507 QENINRLTQQNVELEGVFKNALEENKKLQDAVDNRQKSYDRQSLEREADRQKLS----------- 560
            .:.|.|..|.:.:||.:.::.|:|...|..||:|.:...:||..|.|.:.:.||           
 Frog   513 NKQIERENQSSSDLESLSEDLLKEKDLLSQAVENIKSEKERQIKELEQENKHLSQTLEAVRQRSQ 577

  Fly   561 -------------------------------------------DAEQHVETLNK---EKQRIQTL 579
                                                       .|::.||.::|   |..|::..
 Frog   578 VSTEARVKDIEMENKILHETIKDTSSKLNELEYEKKQLQKAFDQAKEQVEKVDKMENEVHRLEKQ 642

  Fly   580 NESIQRRADDLERLAESKTKELEQ----------YLEKS-----------------------RQY 611
            ||.:.::...: .:.|.|.:.||:          .|:||                       ..:
 Frog   643 NEILTKKVTSI-TIVEEKMQALEKENGVLEEENIVLKKSLDTLQNVTIRLEVLENENKQLDEENF 706

  Fly   612 ELTKQKLYEIEA------RVSTYERENASLLKEVSKLKEGSE------QKSVQLDDSI------- 657
            ||.:    .:||      :::..||||..||||..:|::..|      :||.:|:.|.       
 Frog   707 ELRR----AVEAMRFSCTKITQIERENNELLKEKEELQKNVELLKALGKKSERLEVSYQGLSDEN 767

  Fly   658 ----NRLDVQSKELQKLGKALEDSEQVH---QKLVE----------------------------- 686
                ..||..:|::..|.|.|:|:|:.:   ||.:|                             
 Frog   768 WRLQQMLDNGNKKIDDLQKELQDTEKENKDLQKTLEELKICNKRLERMEEENKAKDQEMAQVEKD 832

  Fly   687 -------------------------------------------------------LEKQNQELAS 696
                                                                   ||::|::|..
 Frog   833 NKTLQKESKRLWQQVELKDAILDDNTVKLADLEKEKRTLEKEVSKLRDLSTKTRDLERENKDLLQ 897

  Fly   697 QRIIDQEMISTLRNDLVTGTLVTKKVRNNLEKLGLADEEPGELNVEHVVEKLVRNPE-------- 753
            |..:|:..::|||.|||...|.|:::.:.||||.|..|:.| ||.|.:::....|.|        
 Frog   898 QMTVDKRTLATLREDLVLEKLKTQQMSSELEKLSLELEKIG-LNKELMLQDENSNAEKKYKLLES 961

  Fly   754 ----TFKTVREIMLN-------------VTREQLEEE-------------EREGGVKSDMCVL-- 786
                |.|:...:..|             ...:||:.|             ..:|..::....|  
 Frog   962 KIESTLKSTLAVKENKILDLEMKIEETSSLNQQLQNELNSIKKDNIASKQNLKGAAQNSYTQLNN 1026

  Fly   787 ---CHRQ---------EIFTV-EKNIELAATPAPAPAQP----------SSQELRFEHKVRLSPA 828
               |:.|         |:... ::.|||....|...|:.          .||.|...:::    .
 Frog  1027 KPECNSQINGQRETIVELLKFKDRTIELERNNAALQAEKQLFREQLHHLESQNLNLSNQM----G 1087

  Fly   829 RESAELTRIKDSNTQLQTENARLSVDVAALGSQITSLNTQHVALQLANSQLAAEKDSLLKEIDSL 893
            ....::|.:::.||.|||:.|.|.|:.|...||:.||.:|...||...|...:|.:.|.::.:.|
 Frog  1088 TLQKQVTFLQEHNTALQTQTANLQVENATATSQVASLKSQISQLQNQLSARESENEILQQKKEHL 1152

  Fly   894 QQEHKHALQDQVTLQCLHDQLSAEYESLNKDKEQLKAAVRDLRQELRDTREQQSALEQRIEELTI 958
            :..|:..|||...|..||:..|:|||.|......||:..:.|.|......|..:.|.:..|||..
 Frog  1153 RVTHESLLQDHEQLGSLHEHQSSEYEGLISQHSSLKSQYKSLEQAHHSLEESYTTLMKHKEELEN 1217

  Fly   959 QNSNMKTCSEDLSILR-------TEHSKLTDDFRNLFATSDRFKNEYKNIQEQYKMVRMEHSSLK 1016
            .::.:|...|.|...|       .|:.||..|...|.......:.||.::.:..|.|:...::.:
 Frog  1218 LDAILKKEQEVLQQERRKNFAAMEENQKLKTDLERLNFLHGELQTEYSSLHKHTKEVKTSLNNAQ 1282

  Fly  1017 LQNTELSGELNAKSDQVRCLQMEYSKVQQRCEMLIQNNAELDSERKALMDNVSQLLSQYQELLAI 1081
            ::........:...:|.:.:.:..:|:...||:|.:..:.|:.|...|:..:..|..|.|.||..
 Frog  1283 MELNRWQARFDELKEQHQTMDISLTKLDNHCELLTRLKSNLEEENHHLLSQIQMLSQQNQMLLEQ 1347

  Fly  1082 SLEDKKHFHEEEKNYTERVHSLKRQKEKLEEKIMEHYKKSETTVHKK------KPFASMLVRRVK 1140
            |:|.|:.:|||:|.|.:::|.|:|||||||||||:.||..:.|..||      |.||.::  :.|
 Frog  1348 SMETKEQYHEEQKQYIDKLHDLRRQKEKLEEKIMDQYKFYDPTPKKKSHWSGAKAFAKLI--KPK 1410

  Fly  1141 KASSDLMNKVPSRNRRSWVDDARTNSQFVIGSESGGN--ESDNSNEEPLSIASD----THLLQRN 1199
            |..|....|.|:......:|:|.     ::.|.|...  .....|.:..|:.||    ..:|...
 Frog  1411 KEPSRESVKSPTDVHSQPMDNAE-----MVASPSSMRPLRFQQENLDSSSLGSDEKGSPKVLSSK 1470

  Fly  1200 VPLRQSLQRDLLDNSIQRGGAVRSSLQAQKRTD----LNNSRR----------NSVHGSLEAPDV 1250
            | |.:..||.  :....|||::       ::||    |:.|||          .::|  |.||..
 Frog  1471 V-LVEVAQRQ--NRMSYRGGSI-------EQTDGLEHLSRSRRMESGSRASSTTAIH--LTAPAH 1523

  Fly  1251 TGSSLTL-GTAGSRRTVYLIDEHQKLPD--GSTPGATQSQSVGGSGSVNAAPPTPAEPQTPQKST 1312
            ...:|.| .|.|......|.|:.|:...  ||:.....|...|...:..::.|...:.:....|:
 Frog  1524 NAKALHLPRTKGCNSDDNLSDQLQEAESHTGSSRVPWTSSLEGSRSASQSSSPLTLKGRPESLSS 1588

  Fly  1313 ENNAPVGPATFLMYN--RINTTIGGASNSGDQSPL 1345
            |:..|......|..|  |.|..:.||:.| .:||:
 Frog  1589 EDMIPTKEIATLPSNLYRPNAVMPGATKS-RESPV 1622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GirdinNP_647780.1 SMC_prok_B 315..1112 CDD:274008 269/1071 (25%)
SynN 884..1006 CDD:294095 34/128 (27%)
ccdc88cXP_002933247.3 HkD_SF 12..164 CDD:425405 57/157 (36%)
Smc <246..629 CDD:224117 130/382 (34%)
Smc 464..1326 CDD:224117 187/871 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 326 1.000 Domainoid score I1187
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 426 1.000 Inparanoid score I1718
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D38555at33208
OrthoFinder 1 1.000 - - FOG0002681
OrthoInspector 1 1.000 - - otm48191
Panther 1 1.100 - - O PTHR18947
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2052
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

Return to query results.
Submit another query.