DRSC/TRiP Functional Genomics Resources

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Protein Alignment Girdin and hook3

DIOPT Version :9

Sequence 1:NP_647780.1 Gene:Girdin / 38385 FlyBaseID:FBgn0283724 Length:1381 Species:Drosophila melanogaster
Sequence 2:XP_031746102.1 Gene:hook3 / 100145808 XenbaseID:XB-GENE-6067268 Length:745 Species:Xenopus tropicalis


Alignment Length:803 Identity:176/803 - (21%)
Similarity:341/803 - (42%) Gaps:181/803 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 SIISWLES------CLPRAELLAGYTSLLDGHIIHSVWLQIDPEPQNNPSELNDLNGKSLSIA-- 75
            |:::|:::      |....:|.:|....:       |..:|||...:.    |.||.....:.  
 Frog    15 SLLTWIQTFHVDAPCKTVDDLTSGVAMAM-------VLQKIDPVYFDE----NWLNRIKTDVGDN 68

  Fly    76 ---RAKNFECVVRNLKSFFEEELGQTI--LVLPDAFTLGHHPESKNGLEQMKTLLTLLLGAAVQC 135
               :..|.:.:::.:..:..|.||..|  ..|||...:|.|.::    .::..:|.|:||.||:|
 Frog    69 WRLKISNLKKILKGILDYNHEILGHQINDFTLPDVNLVGEHSDA----SELGRMLQLILGCAVKC 129

  Fly   136 PNKELFIARIKELDLETQHAIVGLIKQVTDSHSLVLTEDSLERLTPQSM----YTHILRLTKE-- 194
            ..|:.:|..|..::...||.::..|:::            :.:.||.|:    |..:.|..|:  
 Frog   130 EQKQEYIQTIMMMEESVQHMVMTAIQEL------------MSKETPVSIGTDAYAELDRQLKKAN 182

  Fly   195 ---RDVMYLK-WIDLACVETEMTA------SDNL-VECGQ----GVSVTRSPSNGTATSTPSSSS 244
               .|.:..| .|...|.|.:|.|      .|.| .||.:    ...:....|:..|.:......
 Frog   183 EELNDALAAKEEIAQRCHELDMQAYYIQEERDKLRFECNELEERVAGLQEEKSSLLAENQILMER 247

  Fly   245 NSESNHLAVECADLRSKNRKLRQELEEKSENLLELREELDDKKARFD-------KLRQESQEWFT 302
            .::|:.|....:....::.:|:.:||:..|....|....||.:.|.:       :|||::::..|
 Frog   248 MNQSDSLEDPNSPAGRRHLQLQTQLEQLQEETFRLEASKDDYRIRCEELEKEITELRQQNEDLTT 312

  Fly   303 EAKRASAYRDEVDILRERAERADRLEVEVQKYREKLGDSDFYKSRVEELREDNRVLLESKEMLEE 367
            .|..|.:.:||:|:||..:::..:||.:|:.|::||.|....:.:|:.|.|.|.:.:::...|||
 Frog   313 LADEAQSLKDEMDVLRHSSDKVSKLESQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEE 377

  Fly   368 ----------QLQRYRKR-----------SEHAISLESEIIKYKQKINDMALERD---VDRSKLE 408
                      ||:.|:::           |:.|..||.|..:.|:||:.:..|:|   .:|..|:
 Frog   378 ELRKANAARSQLETYKRQVVELQNRLSEESKKADKLEFEYKRLKEKIDSLQKEKDRLRSERDSLK 442

  Fly   409 ELLEENSQLQLVARNLNST--MDLDKSFSENEDDCNSGDNSLSEQLTNNAQTRALKLELENRRLT 471
            |.:||...:|.....|.|.  |.|.     |::..   |:..:|.:|...:.:.::|:.||:.|.
 Frog   443 ETIEELRCVQAQEGQLTSAGLMPLG-----NQEPT---DSLAAEIVTPEIKEKLIRLQHENKMLK 499

  Fly   472 AALE-------QLKESSFHESTSKMLELEKEKKKLSLKIEQMQENINRLTQQNVELEG------- 522
            ...|       .|.:|...::..:..|||.|.:.::.::.:||..:..| |::::.:|       
 Frog   500 INQEGSDNEKISLLQSLLDDANMRKNELETENRLVNQRLIEMQSQVEEL-QKSLQEQGAKAEDAI 563

  Fly   523 --VFKNALEEN-KKLQDAVDNRQKSYDRQSLEREADRQKLSDAEQHVETLNKEKQRIQTLNESIQ 584
              :.|..|||: :||.:|.:..||.           |..:.|.|..   .|....:|:.|.::::
 Frog   564 SLLLKKKLEEHLEKLHEANNELQKK-----------RAIIEDLEPR---YNNSSMKIEELQDALR 614

  Fly   585 RRADDLERLAESKTKELEQYLEKSRQYELTKQKLYEIEARVSTYE-RENASLLKEVSKLKEGSEQ 648
            ::.||::::.|    ..::||||::..             :.|.: ::|.....|:..||...::
 Frog   615 KKEDDMKQMEE----RYKKYLEKAKSV-------------IRTLDPKQNQGTGPEIQALKNQLQE 662

  Fly   649 KS---VQLDDSINRLDVQSKELQKL--------GKALEDSEQVHQKLVE------------LEKQ 690
            :.   |.|:....:...|..:.:||        |..|      |:|..|            |.:|
 Frog   663 RDKMFVSLEKEFEKTKTQRDQEEKLIVSAWYNMGMTL------HKKAAEDRLASTGSGQSFLARQ 721

  Fly   691 NQELASQRIIDQEMISTLRNDLV 713
            .|..:|:|.....:.....:|:|
 Frog   722 RQATSSRRSYPGHVQPATASDVV 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GirdinNP_647780.1 SMC_prok_B 315..1112 CDD:274008 104/466 (22%)
SynN 884..1006 CDD:294095
hook3XP_031746102.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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