DRSC/TRiP Functional Genomics Resources

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Protein Alignment MnM and Fndc3b

DIOPT Version :10

Sequence 1:NP_647779.2 Gene:MnM / 38384 FlyBaseID:FBgn0035410 Length:1443 Species:Drosophila melanogaster
Sequence 2:NP_001178633.1 Gene:Fndc3b / 294925 RGDID:1311673 Length:1207 Species:Rattus norvegicus


Alignment Length:632 Identity:131/632 - (20%)
Similarity:212/632 - (33%) Gaps:236/632 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SAERPSPPGRPILT-PVALPEQQPDVVNLRWDRPLHDGGSPITGYTVEHRRMGSPHWVRATPTPV 88
            |.:||.||.||:|. ||.     ....:::||.|..:|||.|..|.:|         :....:..
  Rat   571 SPDRPGPPTRPLLKGPVT-----SHGFSVKWDAPKDNGGSEILKYLLE---------ITDGASEA 621

  Fly    89 DRCDVCISG---------LEPGWRYQFRCFAENIVGRSDASELSDPLTVTLQRNAITVPRFIDEL 144
            .:.:|..||         |:||..|:.|.......|.|..||.....|::|.......|      
  Rat   622 GQWEVAYSGSATEYVFTHLKPGTLYKLRACCIGTGGHSQCSESLPVRTLSLAPGQCRPP------ 680

  Fly   145 VDTNAVEDERIEFRVRILGEPPPE---INW----FKDGYEIFSSRRTKIVNDNEASVLVIHQVAL 202
                           |:||.|..:   :.|    .:.|.|: |....::....|.:..|.|    
  Rat   681 ---------------RVLGRPKHKEVHLEWDVPASEGGCEV-SEYSVEMTEPEEVASEVYH---- 725

  Fly   203 TDEGEIKCTATNRAGHVITKARLMVQAPPKIRLPRTYEDGLIVEADEVLRLKVGVAGQPP----- 262
              ..|::||..|.....:.:.|:           |...||......:|  .::..|..||     
  Rat   726 --GPELECTVGNLLPGTVYRFRV-----------RALNDGGYGPYSDV--SEITTAAGPPGQCRA 775

  Fly   263 PAITWLHEGEVI-------APGG-----RFEVSNTEK---------NSLLKIDNVLREDRGEYMV 306
            |.:::..:|.|:       :||.     |.|....|:         ::..:|.::|...:....:
  Rat   776 PCVSFTPDGCVLVGWESPESPGADISEFRLEWGEDEESLELIYHGPDTCFEIRDLLPAAQYCCRL 840

  Fly   307 KAWNRLGEDSTSFLV---TVTARPNPPGT---------------PKLNMSFGKSATLSWTAPLDD 353
            :|:|..|....|.||   |..:.|:|..|               |.:.:      .|:|..|   
  Rat   841 QAFNPAGAGPYSELVHCQTPASAPDPVSTLCVLEEEPLSAHLDSPSVCL------VLTWEEP--- 896

  Fly   354 GGCKIGNYIVEYFRVGWNVWLKAATTRALSTTLH---DLIEGSEYKFRVKAENPYGLSEPSGESE 415
              |..|:.|:.|     |:.|........:||.|   :|:..:.|:.|::|.|..| ..|..:  
  Rat   897 --CSNGSEIIAY-----NIDLGDTCITVGNTTTHVLKNLLPETTYRIRIQAVNDIG-DGPFSQ-- 951

  Fly   416 LLFIPDPKRGITKPKSATRIAGDEKDKPKTGAGGMQVPPRRKTLSPPRPQADASTGMSPKQSPSA 480
              ||          |:.||                .:||     ||||.:..||           
  Rat   952 --FI----------KAKTR----------------PLPP-----SPPRLECAAS----------- 972

  Fly   481 KRKPKPQLI------DNEQL--THEMSYGTSDHALKMDVR--------KSPSLN----------- 518
                .||.:      .|.::  .|:|.|     .|:::.|        :.||..           
  Rat   973 ----GPQSLKLKWGDSNSKIHAAHDMVY-----TLQLEDRNKRFISIYRGPSHTYKVQRLTEFTC 1028

  Fly   519 -------SADSANKPTTDSSNPKLNLTLVTTTLAPLDKSVPSPKAPR 558
                   ::::...|.:|:      .|..||...|     |:.||||
  Rat  1029 YSFRIQATSEAGEGPFSDT------YTFSTTKSVP-----PTLKAPR 1064

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MnMNP_647779.2 FN3 29..127 CDD:238020 29/107 (27%)
I-set 138..227 CDD:400151 17/95 (18%)
Ig strand B 155..159 CDD:409565 0/3 (0%)
Ig strand C 168..172 CDD:409565 1/10 (10%)
Ig strand E 194..197 CDD:409565 0/2 (0%)
Ig strand F 207..212 CDD:409565 2/4 (50%)
Ig strand G 220..223 CDD:409565 0/2 (0%)
Ig 243..323 CDD:472250 20/108 (19%)
Ig strand B 251..255 CDD:409353 0/3 (0%)
Ig strand C 264..268 CDD:409353 0/3 (0%)
Ig strand E 289..293 CDD:409353 0/3 (0%)
Ig strand F 303..308 CDD:409353 0/4 (0%)
Ig strand G 316..319 CDD:409353 0/2 (0%)
FN3 327..411 CDD:238020 22/101 (22%)
PHA03247 <420..718 CDD:223021 32/173 (18%)
Fndc3bNP_001178633.1 SOBP <50..163 CDD:464609
FN3 283..377 CDD:238020
FN3 382..473 CDD:238020
FN3 481..570 CDD:238020
FN3 <540..>771 CDD:442628 56/254 (22%)
FN3 <732..1059 CDD:442628 79/422 (19%)
FN3 <1017..>1149 CDD:442628 11/59 (19%)
Blue background indicates that the domain is not in the aligned region.

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