DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp5 and usp13

DIOPT Version :9

Sequence 1:NP_001246589.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_001091856.1 Gene:usp13 / 558011 ZFINID:ZDB-GENE-080724-7 Length:860 Species:Danio rerio


Alignment Length:879 Identity:386/879 - (43%)
Similarity:547/879 - (62%) Gaps:84/879 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EELRKHLSKVNVPCASGAGSPPIYKDECVYSYDNPETPTGLYVCLHSFLGFGEAYVREYADKTGN 66
            |.|..::..:.||.....    ::|.||.:|||:||:..|||||::||||||..:|..:..|||.
Zfish     7 ELLVPYMPTIRVPRTGDR----VFKSECAFSYDSPESEGGLYVCMNSFLGFGREHVERHYRKTGQ 67

  Fly    67 RVFLHIQRVKTIKEGADMEAECAESEAGPERKITRLAIGVE--GGYNESDMAKKYEIKDTYSIVV 129
            .|::|::|  .:||    :|..|...|.|.|:..::.:.:|  ..:|..|    ||.:|...:|:
Zfish    68 SVYMHLKR--HVKE----KATGAAGGAIPRRRNGKVFLDLELNRDFNGDD----YEYEDEAKLVI 122

  Fly   130 AP-HLDKKLPYPD-PELPMRVTQSVEAILAADSAIAKLEKATLMGTWDGEVRQASKYADNLQQLD 192
            .| |.:  :|.|: .|||..||.:.:|:|.|.|...|.|.    .:|:.|: |.|::|.:|:|||
Zfish   123 FPDHYE--IPLPNIEELPALVTIACDAVLNAPSPYKKQES----DSWEEEI-QVSRHARSLRQLD 180

  Fly   193 NGKRIPPSGWQCEKCDLTNNLWLNLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLAVKLGTIT 257
            ||.|||||||:|.||::..||||||||||::||:.||||||||.||:||||.:.|||||||.|||
Zfish   181 NGVRIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALEHYRESNFPLAVKLNTIT 245

  Fly   258 ADGKSDVFSYPEDEMVLDPHLERHLSHFGINMAAMKKSEKSMVELELDINQRIGEWTALTESESE 322
            .|| :|::|:.|:|.|||||:..||.||||:|..|:::|... ..:..:..||.:|..:.|:..:
Zfish   246 PDG-ADIYSFDEEEAVLDPHISEHLLHFGIDMLQMQRTENGH-HTDNHVQPRISDWEVIQEAGLK 308

  Fly   323 LQPVAGPGYTGMRNLGNSCYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKL 387
            |:||.|.||||::|||||||:::.|||||.||:||:.:.| ..:|.|...|.||..|||.|||||
Zfish   309 LKPVYGSGYTGIKNLGNSCYLSTTMQVLFSIPEFQRAYAG-NLQRIFDYSPLDPTQDFNTQMAKL 372

  Fly   388 GTGLQSGKY------SSIAENTLDTDH----STGISPAMFKNIVGKNHPDFSTKQQQDANDFYLH 442
            |.||.||:|      |.:.|..:..:|    ..||||.|||.:|.|.||:||:.:||||::|.||
Zfish   373 GHGLLSGQYSKPPMKSELIEQVMKEEHKQQQQRGISPKMFKALVSKGHPEFSSNRQQDAHEFLLH 437

  Fly   443 LLTLLDRNSRNQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREFQE 507
            |:.|::||:....||:|..:|::|:|.:|..|.||:|..|.:|..:|||||:.|:|.:|:..::.
Zfish   438 LINLVERNNSGSENPSDVFRFIVEERTQCCQSQKVRYTQRVDYLMQLPVPLEAASNREELIAYEG 502

  Fly   508 RKKAARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYSTAIGSKTNARKITRLATMPDCLM 572
            ::|.|.|..:.||  ::||.:||..|||:.|..||.:..|:|:|:.:|:...|.:|.||.|:.::
Zfish   503 KRKEAEENMRPLP--EVVRARVPFTACLQAFTEPENVPDFWSSALQAKSAGVKTSRFATFPEYMI 565

  Fly   573 IHVGKFTLGDDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPE---PAT--EEVKFA---- 628
            :.:.|||.|.||||||||:|||:||.|||:..| |.|||.|||.||:   |..  |:.:.:    
Zfish   566 VQLKKFTFGVDWVPKKLDMSVDVPDFLDLNRLR-ATGLQAGEEELPDLTPPIVIPEDTRDSSTNN 629

  Fly   629 ------FDEAVMSELLTMGFPPEACKRACYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIG 687
                  .||:.:.:|..||||.|||::|.|:|.|.|.|.|.||::.|:.:.|.:||..||.....
Zfish   630 SLESPEIDESSVMQLAEMGFPLEACRKAVYYTGNMGAEMAFNWIIAHMEEPDFAEPLAVPTYMES 694

  Fly   688 DCAA----------NQFVANPESLAMLMSMGFDERQAVAALKATDGNVERATDWIFSHAD----S 738
            |..:          ||  ...||:::|.||||.....:.||||::.|:|||.||||:|.|    |
Zfish   695 DLPSPSLPTTSALDNQ--PPEESISILTSMGFPRHHTIRALKASNNNLERALDWIFTHPDCEDES 757

  Fly   739 IGVEDAA---PAANSSAAAASSTPNKTN---------YRDGRGKYRLVAFISHMGTSAQVGHYVC 791
            ..:.|.|   |..||.:.|.:.|.:..:         .|||.|:|.|.|||||||||...|||||
Zfish   758 EAMSDTADTEPNDNSFSNANAHTDSSLSPDQDLSSPRVRDGPGRYELFAFISHMGTSTMSGHYVC 822

  Fly   792 HIRKKGEWVIFNDSKVAKSQNPPKDLGYLYLYMR 825
            ||:|:|.|:|:||.||..|:.|||||||:|.|.|
Zfish   823 HIKKEGRWLIYNDHKVCLSERPPKDLGYMYFYRR 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp5NP_001246589.1 UBP14 24..825 CDD:227532 381/855 (45%)
zf-UBP 204..278 CDD:280334 49/73 (67%)
Peptidase_C19B 333..823 CDD:239123 237/540 (44%)
UBA1_UBP5_like 631..674 CDD:270480 19/42 (45%)
UBA2_UBP5 696..737 CDD:270569 20/40 (50%)
usp13NP_001091856.1 UBP14 13..857 CDD:227532 384/873 (44%)
zf-UBP 192..264 CDD:280334 48/72 (67%)
Peptidase_C19B 319..855 CDD:239123 237/541 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 611..636 2/24 (8%)
UBA1_UBP13 635..683 CDD:270567 21/47 (45%)
UBA2_UBP5 711..752 CDD:270569 20/40 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 755..795 8/39 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 469 1.000 Domainoid score I431
eggNOG 1 0.900 - - E1_COG5207
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 777 1.000 Inparanoid score I513
OMA 1 1.010 - - QHG53559
OrthoDB 1 1.010 - - D556111at2759
OrthoFinder 1 1.000 - - FOG0002129
OrthoInspector 1 1.000 - - otm26454
orthoMCL 1 0.900 - - OOG6_101380
Panther 1 1.100 - - O PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1410
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.840

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