DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp5 and puf

DIOPT Version :10

Sequence 1:NP_647773.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster


Alignment Length:496 Identity:84/496 - (16%)
Similarity:149/496 - (30%) Gaps:194/496 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 GYTGMRNLGNSCYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKLGTGLQSG 394
            ||.|:.|||.:||:.|.:|.|:::|.         |.......|.:.|......:.:|     ..
  Fly  2013 GYVGLTNLGATCYMASCVQHLYMMPQ---------ARAAVLRVPPNAARKHGPTLLEL-----QR 2063

  Fly   395 KYSSIAENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFYLHLLTLLDRNSRNQTNPAD 459
            .::.:.|:     .....:|..|..:...:|...:|.:|:|..:|::.|::.|:       :...
  Fly  2064 MFAYLLES-----ERKSYNPRSFCRVYQMDHQPLNTGEQKDMAEFFIDLVSKLE-------DMTP 2116

  Fly   460 ALKFL--------LEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREFQERKKAARETG 516
            .||.|        |.:.|..|....|.....:.|:.|..|.        ::|..||         
  Fly  2117 DLKHLVKRLFCGSLSNNVVSLDCGHVSRTAEDFYTVRCQVA--------DMRNLQE--------- 2164

  Fly   517 QRLPDRDIVRHKVPLQACLERFFGPELIEQFYS-TAIGSKTNARKITRLATMPDCLMIHVGKFTL 580
                ..|.|..|..|:.           :..|: :..|.|..|.|......:|..|..:..::|.
  Fly  2165 ----SLDEVTVKDTLEG-----------DNMYTCSQCGKKVRAEKRACFKKLPQILCFNTMRYTF 2214

  Fly   581 G-DDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPEPATEEVKFAFDEAVMSELLTMGFPP 644
            . ...:.:|::.....|..|::.::..       :..:|:...||                    
  Fly  2215 NMVTMLKEKVNTHFSFPLRLNMCHYVE-------KTLMPQQYKEE-------------------- 2252

  Fly   645 EACKRACYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVANPESLAMLMSMGF 709
                |.....:..|.:.:                        ||                   |.
  Fly  2253 ----RERRQKEKEGADGS------------------------GD-------------------GN 2270

  Fly   710 DERQAVAALKATDGNVERATDWIFSHADSIGVEDAAPAANSSAAAASSTPNKTNYRDGRGKYRLV 774
            |..:|.|.|   |.::|...:                                        |.||
  Fly  2271 DNEKAEATL---DDDIEECYE----------------------------------------YELV 2292

  Fly   775 AFISHMGTSAQVGHYVCHIRKKGE--------WVIFNDSKV 807
            ....|.|| |..|||...|:::.:        |.:|||::|
  Fly  2293 GVTVHTGT-ADGGHYYSFIKERTKTSYHTHERWFLFNDAEV 2332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp5NP_647773.1 zf-UBP_var 11..77 CDD:407678
zf-UBP 204..278 CDD:460464
Peptidase_C19B 333..823 CDD:239123 82/493 (17%)
UBA1_UBP5_like 631..674 CDD:270480 2/42 (5%)
UBA2_UBP5 696..737 CDD:270569 7/40 (18%)
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 84/496 (17%)
DUF3517 2648..>2884 CDD:463438
MDN1 <3661..>3887 CDD:444083
Blue background indicates that the domain is not in the aligned region.

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