DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp5 and scny

DIOPT Version :10

Sequence 1:NP_647773.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster


Alignment Length:150 Identity:31/150 - (20%)
Similarity:55/150 - (36%) Gaps:40/150 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   379 RHKLLPEVDKQ-----RNLPSSQVLNRKSK-------AVFISSSSPGYFKSIRDVYWENPTVMGE 431
            :||.|.:|.||     |.:.:|:...:|.|       |.::........:::.||..||.:.   
  Fly   251 KHKKLSKVMKQNVEFPRGVGTSEKSAKKDKMGKAFDDADYVKDDDEEEEEAVSDVELENKSA--- 312

  Fly   432 IISVHKPSYKDYQKTPRNMESKRAWAEIYLLSCSDALVVT----GLWSSLVEVAHGLGGLKPWVL 492
                         :|.|..|..::..:      ::..|.|    |...:|:|...||....|  .
  Fly   313 -------------RTRRGAEEGQSEVK------TEMTVTTRRRSGHSGNLIEFPRGLPPAPP--R 356

  Fly   493 NKAENGTAHEPYCVKARSIE 512
            .:.|||...:....||.:.:
  Fly   357 KRKENGLEVDQQLKKAEAAQ 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp5NP_647773.1 zf-UBP_var 11..77 CDD:407678
zf-UBP 204..278 CDD:460464
Peptidase_C19B 333..823 CDD:239123 31/149 (21%)
UBA1_UBP5_like 631..674 CDD:270480
UBA2_UBP5 696..737 CDD:270569
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 31/149 (21%)
Blue background indicates that the domain is not in the aligned region.

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