DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp5 and usp-3

DIOPT Version :10

Sequence 1:NP_647773.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_493434.3 Gene:usp-3 / 190579 WormBaseID:WBGene00013506 Length:550 Species:Caenorhabditis elegans


Alignment Length:716 Identity:125/716 - (17%)
Similarity:200/716 - (27%) Gaps:318/716 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 CEKCDLTNNLWLNLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLAVKLGTITADGKSDVFSYP 268
            |::||..|...:.||.|.|:|||   :.||   ||:.|:..|..|:.:...:.      :::.|.
 Worm    53 CDECDNCNKSLMCLTCGRILCGR---NDSG---HALHHFEETSHPVVIDCISF------ELYCYS 105

  Fly   269 -EDEMVLD--PHL------------------------------------------ERHLSHFGIN 288
             :||:.||  |.|                                          :.|::....|
 Worm   106 CDDEVSLDFEPSLYGVLKSLKLLFDREDVMEGGDGPTIPAQPFQTVTSVASTFTQKLHVAPASRN 170

  Fly   289 MAAMKKSEKSMVE----------------------LELDINQRIGEWTALTESESELQPVAGPGY 331
             :..|:.:|..|.                      |....:...|...|.:.||...:|      
 Worm   171 -SKKKRGKKGKVSPMFVDTPPFQQQQGAAVIHDVTLSSTNSTSSGSGGATSSSEIAYRP------ 228

  Fly   332 TGMRNLGNSCYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNI-----QMAKLGTGL 391
            .||||:||:|::|:|:|.|..|.:|::..:...:...:.....:|.|..|.     :..||   |
 Worm   229 RGMRNVGNTCFMNAVLQALASISEFREYIMSLSSLEDYIHDEKEPKNGGNYCYLTDEYRKL---L 290

  Fly   392 QSGKYSSIAENTLDTDHSTGISPAMFKNIVGKNHPDFSTKQQQDANDFYLHLLTLLDRNSR---- 452
            .|....|..|.|         :|..|:.......|.|...:|.|:::|..:.:..|....|    
 Worm   291 ISQSARSFREPT---------APNEFREAFISVCPRFRGFRQHDSHEFMRYFMDSLHTEMRKCRK 346

  Fly   453 -------NQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREFQERKK 510
                   ..|..:...:..|:..|.|...........|.....|.:|..:..:            
 Worm   347 LPGMPDDKHTPISKYFEGTLQSSVICQTCRNCSNKIDEFMDLSLDIPAQRNAS------------ 399

  Fly   511 AARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYSTAIGSKTNARKITRLAT--------- 566
                             ||.|..||..||..|::|:      |.|....|.....|         
 Worm   400 -----------------KVRLSDCLSTFFKLEMLEK------GEKPECAKCKTKQTCSKQMFIRK 441

  Fly   567 MPDCLMIHVGKFTLGDDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPEPATEEVKFAFDE 631
            :|..|.:|:.:|                          |..||.                   ::
 Worm   442 LPQVLCLHMKRF--------------------------RDNGGK-------------------ND 461

  Fly   632 AVMSELLTMGFPPEACKRACYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVA 696
            |::.      ||                                          :|.....||: 
 Worm   462 AIID------FP------------------------------------------MGQLDVTQFL- 477

  Fly   697 NPESLAMLMSMGFDERQAVAALKATDGNVERATDWIFSHADSIGVEDAAPAANSSAAAASSTPNK 761
                                            ||      ||    |.||..             
 Worm   478 --------------------------------TD------DS----DEAPCT------------- 487

  Fly   762 TNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGEWVIFNDS--KVAKSQNPPKDLGYLYLYM 824
                     |.|.:.|.|:|.....|||:...::.|.|..|:|:  |.....:..|...|:.||.
 Worm   488 ---------YSLQSIIVHIGYGCGSGHYIAFGKRNGRWFQFDDTVVKGVDEAHVSKQKAYVLLYT 543

  Fly   825 R 825
            :
 Worm   544 K 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp5NP_647773.1 zf-UBP_var 11..77 CDD:407678
zf-UBP 204..278 CDD:460464 24/76 (32%)
Peptidase_C19B 333..823 CDD:239123 87/516 (17%)
UBA1_UBP5_like 631..674 CDD:270480 3/42 (7%)
UBA2_UBP5 696..737 CDD:270569 2/40 (5%)
usp-3NP_493434.3 zf-UBP 53..111 CDD:460464 21/69 (30%)
UCH 229..542 CDD:425685 87/517 (17%)
Blue background indicates that the domain is not in the aligned region.

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