DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp5 and usp13

DIOPT Version :9

Sequence 1:NP_001246589.1 Gene:Usp5 / 38375 FlyBaseID:FBgn0035402 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_001363854.1 Gene:usp13 / 100498395 XenbaseID:XB-GENE-998128 Length:849 Species:Xenopus tropicalis


Alignment Length:873 Identity:374/873 - (42%)
Similarity:543/873 - (62%) Gaps:82/873 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EELRKHLSKVNVPCASGAGSPPIYKDECVYSYDNPETPTGLYVCLHSFLGFGEAYVREYADKTGN 66
            |.|..::..:.|| .||   ..:||.||.:|||:||:..|||||:.:|||||..:|..:..|||.
 Frog     7 ELLVPYMPTIRVP-KSG---DRVYKTECAFSYDSPESDGGLYVCMSTFLGFGREHVERHYRKTGQ 67

  Fly    67 RVFLHIQRVKTIKEGADMEAECAESEAGPERKITRLAIGVEGGYNESDM-AKKYEIKDTYSIVVA 130
            .|::|::|...:|      |..|...|.|:|...||.:.:|   |.::| .:.||.:|...:|:.
 Frog    68 SVYMHLKRHIRLK------ATGASGGAFPKRINGRLFLDLE---NNTEMNTEDYEYEDEAKLVIF 123

  Fly   131 P-HLDKKLPYPDPELPMRVTQSVEAILAADSAIAKLEKATLMGTWDGEVRQASKYADNLQQLDNG 194
            | |.:..||..: |||..||.:.:|:|.:.|...||::.    :|:.|: |.||:|:||.|:|||
 Frog   124 PDHFEIALPNIE-ELPALVTIACDAVLNSKSPYRKLDQE----SWEEEL-QVSKFANNLVQIDNG 182

  Fly   195 KRIPP-----SGWQCEKCDLTNNLWLNLTDGSIMCGRKFFDGSGGNDHAVEHYRVTGFPLAVKLG 254
            .:|||     |||:|.||||..|||||||||||||||.|..|||||.||:||::..|:||||:||
 Frog   183 VKIPPSSLFLSGWKCSKCDLQENLWLNLTDGSIMCGRWFCSGSGGNGHALEHHKQMGYPLAVRLG 247

  Fly   255 TITADGKSDVFSYPEDEMVLDPHLERHLSHFGINMAAMKKSEKSMVELELDINQRIGEWTALTES 319
            :||.|| :||:|:.|:|.|:||||.:||:||||:|..|:.||..:  |:.::..|:.||..:.|:
 Frog   248 SITPDG-ADVYSFDEEEAVIDPHLAKHLAHFGIDMLQMQGSENGV--LDNEVKPRVNEWEVIQET 309

  Fly   320 ESELQPVAGPGYTGMRNLGNSCYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQM 384
            ..:|:|:.|.||||::|||||.|:.:||||:|.||:||:.:|| ...|.|...|.||..||:.||
 Frog   310 GLKLKPMFGSGYTGIKNLGNSSYLTTVMQVIFSIPEFQRAYVG-NLTRIFDYAPLDPTQDFSTQM 373

  Fly   385 AKLGTGLQSGKY------SSIAENTLDTDHS---TGISPAMFKNIVGKNHPDFSTKQQQDANDFY 440
            ||||.||.||::      |.:.|..:..:|.   .||:..|||.::.|.|.:||:.:||||.:|:
 Frog   374 AKLGHGLLSGQFSKPPMKSELIEQVMKEEHKPQPKGINTRMFKALMSKGHTEFSSNRQQDAEEFF 438

  Fly   441 LHLLTLLDRNSRNQTNPADALKFLLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREF 505
            ||.:.|::|||....||:|..:||:|:|.:|..|.||:|..|.:|..:||||::.|||.:|:..:
 Frog   439 LHFINLVERNSIGAENPSDVFRFLVEERTQCCQSRKVRYTERVDYIMQLPVPMETATNKEELIAY 503

  Fly   506 QERKKAARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYSTAIGSKTNARKITRLATMPDC 570
            ..:::.| |:.:| |..::||.|:|..|||:.|..||.:..|:|:|:.:|:...|.:|.|:.|:.
 Frog   504 DLKRREA-ESAKR-PPPELVRAKIPFSACLQAFTEPENVPDFWSSALQAKSAGVKTSRFASFPEY 566

  Fly   571 LMIHVGKFTLGDDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPEPA---------TEEVK 626
            |::.:.|||.|.||||||||||:||||.||:::.| |.||:.|||.||:.|         .:..:
 Frog   567 LVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLR-ATGLKSGEEELPDIAPPIIIPDDPNDHSR 630

  Fly   627 FAF------DEAVMSELLTMGFPPEACKRACYHTKNSGLEAASNWLMEHIADEDISEPFVVPN-- 683
            ..|      ||:.:.:|..||||.|||::|.|:|.:.|.|.|.||::.|:.:.|.:||.::|.  
 Frog   631 NHFMEYPDIDESSVMQLAEMGFPLEACRKAVYYTGSMGAEVAFNWIIAHMEEPDFAEPLIIPGCG 695

  Fly   684 --NSIGDCAANQFVANP--ESLAMLMSMGFDERQAVAALKATDGNVERATDWIFSHADSIGVEDA 744
              .|......|..:..|  |.:|::.||||....|:.||:||:.|:|||.||:|||.:|   |:.
 Frog   696 TVTSTSSHGQNALLNQPPEEIVALICSMGFPRNHALQALRATNNNLERALDWMFSHPES---EEG 757

  Fly   745 APAANSSAAAASSTPNKTN------------YRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKG 797
            |    .:.:....|.|..|            .:||.|:|.|...|||.|||...|||||||:|:|
 Frog   758 A----DNVSGCVDTENNPNGIITDSEQEGPRIKDGNGRYELFGIISHAGTSTMSGHYVCHIKKEG 818

  Fly   798 EWVIFNDSKVAKSQNPPKDLGYLYLYMR 825
            .|||:||.||:.|:.|||:|||:|.|.|
 Frog   819 RWVIYNDHKVSASERPPKELGYIYFYHR 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp5NP_001246589.1 UBP14 24..825 CDD:227532 367/849 (43%)
zf-UBP 204..278 CDD:280334 49/73 (67%)
Peptidase_C19B 333..823 CDD:239123 221/531 (42%)
UBA1_UBP5_like 631..674 CDD:270480 18/42 (43%)
UBA2_UBP5 696..737 CDD:270569 21/42 (50%)
usp13NP_001363854.1 UBP14 13..847 CDD:227532 372/867 (43%)
Peptidase_C19B 323..844 CDD:239123 221/531 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 480 1.000 Domainoid score I418
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 790 1.000 Inparanoid score I504
OMA 1 1.010 - - QHG53559
OrthoDB 1 1.010 - - D556111at2759
OrthoFinder 1 1.000 - - FOG0002129
OrthoInspector 1 1.000 - - otm48493
Panther 1 1.100 - - O PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1410
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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