DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11537 and Vmat

DIOPT Version :9

Sequence 1:NP_001097489.1 Gene:CG11537 / 38373 FlyBaseID:FBgn0035400 Length:705 Species:Drosophila melanogaster
Sequence 2:NP_001014525.1 Gene:Vmat / 3346192 FlyBaseID:FBgn0260964 Length:646 Species:Drosophila melanogaster


Alignment Length:765 Identity:141/765 - (18%)
Similarity:248/765 - (32%) Gaps:250/765 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 TDRDGDADRERQESGEQTDSLSTRSSSSTPTTADVADVETISS-----LPLSPPAFGGRGNQLVK 104
            ||......|:..:|     :...:.|..:.||:...:..|.::     :|..|.:          
  Fly     5 TDAGNGGPRKHTQS-----TAPQKQSEISETTSFTVNANTTTNSQQQQIPGGPAS---------- 54

  Fly   105 RHSPLKDKQAEQADSSSSSSCSQQPDADDVPTVSGCDLRQSPPSSSSSSSSTSTSPQTSRYAAAA 169
             ::|.|:...:|.||:..:. :.:||..    :.|.......|...:..|.|        ||...
  Fly    55 -NTPSKNPFKQQLDSNQQNG-NMEPDCG----IMGVGKEPPVPPPPTYQSQT--------YAGRQ 105

  Fly   170 AHPSA--------------AFAETAITASSGSGRVCGGSGGAAHRRTHSAASYI---------SM 211
            |.|.|              |.|::.:.:..||.|:.......|....:...:.:         .:
  Fly   106 APPPADQYREEDPRAAGSWAAAKSWMVSWRGSNRLVLVIVAIALLLDNMLLTTVVPIIPEFLYDI 170

  Fly   212 RSQGGNSEATPERPKRNRFFEWIRVVCNI------CCCKSSGIGEPSVHHALVVIFLEFFAWGLL 270
            |......::.|..|          :..|:      |.|...|.....:.                
  Fly   171 RHPDAPLDSFPRTP----------LTSNVPPPPTPCPCNKDGSEAAPLE---------------- 209

  Fly   271 TMPIISTL----NQTF-----PDHTFLMN-----GLVMGIKGILSFLSAPLIGALSDIWGRKFFL 321
                |||:    |:|:     ..|..|:.     ||:...|..:..|..|::|.|:...|     
  Fly   210 ----ISTISPEENETYYRELEERHNELVGETVEVGLLFASKAFVQLLVNPIVGPLTHRIG----- 265

  Fly   322 LVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVF------------------AYVAD-VT 367
                    ..||:.:.....|.:.|..  ||..::.|:|                  ..:|| .|
  Fly   266 --------YSIPMFAGFVIMFLSTIIF--AFGRSYLVLFVARALQGIGSSCSSVSGMGMLADRFT 320

  Fly   368 TPEERSKAYGLASATFAASLVISPALGNALMEMYGDT----LVVALSTAIALLDVFFILVAVPES 428
            ..:||..|.|:|....|..::|.|..|..:.|..|.:    ::.||:....||.:|.:..::.::
  Fly   321 DDKERGNAMGIALGGLALGVLIGPPFGGVMYEFVGKSAPFLILAALALGDGLLQLFMLQPSIQKA 385

  Fly   429 LSEKMRPASWGAPISWEQADPFLAL-------RKVGTDKTVLMLCLTVL-----------LSYLP 475
            .:|   |.|..:.||    ||::.:       ..:|.......|.|.::           :::||
  Fly   386 ETE---PPSLKSLIS----DPYILIAAGAITFANMGIAMLEPSLPLWMVDNMGATRWEQGVAFLP 443

  Fly   476 EAGEY---SCMFVYLKLKMGFNYVEVSVFIAIVGILSITVQVTLGSFMQVFGAKRTIIMGLALEI 537
            .:..|   :.:|..|..|:|      ..|.|.:|:      :.:|..:        |.:.:|..|
  Fly   444 ASISYLIGTNLFGPLGHKIG------RWFAACLGL------IIIGGCL--------IFIPMATSI 488

  Fly   538 VQLLWYGFGSQKWMMWSAGVVAALG---SITYPAISAFVSLYAAPESQGAVQGMI--TGMRGLCN 597
            ..|:          :.:||:..|:|   |...|.:...|.:     ...||.|.:  .|....|.
  Fly   489 THLI----------IPNAGLGFAIGMVDSSMMPELGYLVDI-----RHSAVYGSVYALGDVAFCV 538

  Fly   598 G--LGPA--------------VFGVVFYLF----------NVDLNDDHDSH-AKSSGSRATNVEK 635
            |  :|||              :||:....|          |...:|:.... |:.:...|.....
  Fly   539 GFAVGPALSGSLVKSIGFEWMLFGIAILCFMYAPLLTLLKNPPTSDEKKVRMAREAAEAAAAAAA 603

  Fly   636 ISQHVPGPPFVFGALCVFC-AIIVSAFIPEGQTSTLEKKRASLDVQYEIE 684
            .|....|.|    .:...| ||:..|.:|:..........|     ||.|
  Fly   604 ASGEFSGIP----QMTASCPAIMHGASVPDSDAEAGRTNEA-----YESE 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11537NP_001097489.1 MFS 256..612 CDD:119392 86/444 (19%)
MFS_1 257..601 CDD:284993 80/408 (20%)
VmatNP_001014525.1 MFS 238..578 CDD:119392 79/396 (20%)
MFS_1 238..544 CDD:284993 73/362 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.