DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11537 and vpat-1

DIOPT Version :9

Sequence 1:NP_001097489.1 Gene:CG11537 / 38373 FlyBaseID:FBgn0035400 Length:705 Species:Drosophila melanogaster
Sequence 2:NP_741716.2 Gene:vpat-1 / 180457 WormBaseID:WBGene00018860 Length:628 Species:Caenorhabditis elegans


Alignment Length:668 Identity:133/668 - (19%)
Similarity:233/668 - (34%) Gaps:171/668 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LEDSEAEQVNSPVAIKGEPSAHGDT--DRDGDADRERQE----------SGEQTDSLSTRSSSST 73
            |:...:.:|..|..:     .:|.|  :|.|.....::|          :.:.|..|.||:.|  
 Worm    15 LDMDTSSEVYYPTLV-----GYGGTSNERSGSTSAGKKEKKVVSINTADTRKSTQHLKTRNHS-- 72

  Fly    74 PTTADVADVETISSLPLSPPA--------FGGRGNQLVKRHSPLKDKQAEQADSSSSSSCSQQPD 130
              |::..|.|.   .||..|:        :.|........|:|....::|......:....::|.
 Worm    73 --TSNAIDNEL---TPLLHPSISLPTVVGYDGFNEDYQAGHNPPTTTRSEIGPREFARKKRRRPR 132

  Fly   131 ADDVPTVSGCDLRQSP------PSSSSSSSSTSTSPQTSRYAAAAAHPSAAFAETAITASSGSGR 189
            .:   |:.|.:.::.|      |....|:..:...|::|..:|...:.|.| ...:|..|.||  
 Worm   133 FN---TLQGLNRKKKPRPFIISPFMPISTQISVDGPRSSALSAKINYESTA-ERLSIKESEGS-- 191

  Fly   190 VCGGSGGAAHRRTHSAASYISMRSQGGNSEATPERPKRNRFFEWIRVVCNICCCKSSGIGEPSVH 254
                   .:.....||.|        ...:|.|          :::...:.....||        
 Worm   192 -------ESDSDEESAIS--------DEEQAVP----------FLKSALHTVSALSS-------- 223

  Fly   255 HALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMN------GLVMGIKGILSFLSAPLIGALSD 313
            ..|:.|.:...| .|.:....|.:...:|....|.|      |:|.||.....|:.:||.|....
 Worm   224 RQLLSISMLSLA-NLCSTIAFSCIAPFYPAEAKLKNLSETQTGIVFGIFEFTMFIISPLFGKYII 287

  Fly   314 IWGRKFFLLVTV-----------FFTCLPIPLMSINTWWFFAMI-----SISGAFAVTFSVVFAY 362
            ..|.:...:|.:           |...||    |.||:::|:::     ::..|..||.|  || 
 Worm   288 FIGARTMFIVGIAVTGVTAILFGFLNFLP----SGNTFFWFSVLVRILEAVGDAAFVTSS--FA- 345

  Fly   363 VADVTTPEERSKAYGLASATFAASLVISPALGNALMEMYG---DTLVVALSTAIALLDVFFIL-- 422
            :|..:.|:..:...|:............|.:|....::.|   ..||:.:...:|.:..||::  
 Worm   346 IAAKSFPKNVAFVVGILETFAGLGYTAGPVIGGFFYDIGGFQLPFLVLGIVLLVASVLAFFLIEN 410

  Fly   423 ----VAVPE--SLSEKMR-PASW-------GAPISWEQADPFLALRKVGTDKTVLMLCLTVLLSY 473
                .:.||  .:.|.:| |..|       ...||....||.|:               ..|.|:
 Worm   411 TKDDESNPEDKGMLEILRLPQIWLPIFSVVSCAISLSFLDPTLS---------------NHLESF 460

  Fly   474 LPEAGEYSCMFVYLKLKMGFNYVEVSVFIAIVGILSITVQVTLGSFMQVFGAKRTIIMGLALEIV 538
            .....|...||:   |..||..|...||.||:.      ::..|..:.:||:..|::....:...
 Worm   461 KLTPTEIGLMFL---LCGGFYTVMCPVFGAIMD------RLHNGENLLLFGSIATLLSMFFIGPT 516

  Fly   539 QLLWYGFGSQKWMMWSAGV-VAALGSITYPAISAFVSLYAAP-------------ESQGAVQGMI 589
            .|| .|:..:.  :|..|: :|.||   ..|.:.::..:...             .:.|.|.|:.
 Worm   517 PLL-NGYVEKD--LWVIGISLAVLG---LAASALYIPCFQMCLDEVKDKGFDDNFHTYGCVSGIF 575

  Fly   590 TGMRGLCNGLGPAVFGVV 607
            ....|..:.:|| .||.|
 Worm   576 QAAFGFGSFIGP-TFGSV 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11537NP_001097489.1 MFS 256..612 CDD:119392 88/407 (22%)
MFS_1 257..601 CDD:284993 83/398 (21%)
vpat-1NP_741716.2 MFS_SLC18B1 229..621 CDD:340943 87/403 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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