DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment promL and Prom1

DIOPT Version :9

Sequence 1:NP_001261351.1 Gene:promL / 38372 FlyBaseID:FBgn0026189 Length:1013 Species:Drosophila melanogaster
Sequence 2:XP_008768433.1 Gene:Prom1 / 60357 RGDID:69367 Length:866 Species:Rattus norvegicus


Alignment Length:926 Identity:185/926 - (19%)
Similarity:363/926 - (39%) Gaps:165/926 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 GQPHW--PPVQYTVYRPTTNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYIVVKNSDT 144
            |||.:  .|.......|||.|..........::|::...|...:.|...|.|......:::....
  Rat    21 GQPAFDNTPGALNYELPTTEYETQDTFNAGIIDPLYQMVHIFLNVVQPNDFPQDLVKKLIQKRFD 85

  Fly   145 LSLGPKVEENDWRDL-LAHYWM-VLIWVVILVVLIIVIPFIAVCYCCFCCCRRCRQGCPPCTSKQ 207
            :|:..|..||....| :|.|.: |||.|::.::.|.::|.:...:|...||.:|.........:.
  Rat    86 ISVDTKEPENIVLALKVAIYEIGVLICVILGLLFIFLMPLVGFFFCMCRCCNKCGGEMHQRQKQN 150

  Fly   208 DAQRRFCCGICLLILIIGLIFGIIIAFVTNKMIDSGFAETSETMKRGSEDTCTYLKDVADHVHHL 272
            ::.||.|..|.||::.:.:..||...||.|:...:....|.:..:....|....|.:....:.::
  Rat   151 ESCRRKCLAISLLLICLLMSLGIAFGFVANQQTRTRIQRTQKLAESNYRDLRALLTEAPKQIDYI 215

  Fly   273 M-MYN------YEEME------------------THVLDQLTHAHRHIFLDLSDTSESNSLAEME 312
            : .||      :.:::                  |.||:::             .:.:.::.:.:
  Rat   216 LGQYNTTKNKAFSDLDSIDSVLGGRIKGQLKPKVTPVLEEI-------------KAMATAIRQTK 267

  Fly   313 RVLENMPEALELMRQVEKMEKDLRFYGSQLRDGVRGIKRDV-NFAVANLCQLQMCQKFLIS---- 372
            ..|:||..:|          |.||...:||...:..::..: |...:|.|......|...|    
  Rat   268 DALQNMSSSL----------KSLRDASTQLSTNLTSVRNSIENSLNSNDCASDPASKICDSLRPQ 322

  Fly   373 -SNI-EHIDSSQCLHFDNLPNTKEFVEGMENIVASEYYAIPQRGLSRLKKVSDKVKTQLSFVVPP 435
             ||: .:.:.||      ||:....:..:.::..::..::.:||...:.::.:.::.|...|:  
  Rat   323 LSNLGSNHNGSQ------LPSVDRELNTVNDVDRTDLESLVKRGYMSIDEIPNMIQNQTGDVI-- 379

  Fly   436 MMRDLTKGRTIFREHATNVRNIVEGVLSDIHIKTLHSTKSFEDVYERFGH---DRN--------- 488
                            .:|:..::.|.|  .:|.:..:...|:|..:|.|   |.|         
  Rat   380 ----------------KDVKKTLDSVSS--KVKNMSQSIPVEEVLLQFSHYLNDSNRYIHESLPR 426

  Fly   489 ---------VVSLIVCLLILLVLFILIFALLCGCFG--RRRTGYGDECCSKSTGATCLLLAI--L 540
                     :..||||.|:.|::......||||.||  :|.|.....|.| :||...|:..:  .
  Rat   427 VEEYDSYWWLGGLIVCFLLTLIVTFFYLGLLCGVFGYDKRATPTRRGCVS-NTGGIFLMAGVGFS 490

  Fly   541 LIFCVFSFIALVGLFYFMLGMVTYQGACAPLRDQENNTLFRQLDASIDLN----HYLPPSESNKE 601
            .:||....|.:|  ..|::|....:..|.|   .||..|.:.||....||    .||    |...
  Rat   491 FLFCWILMILVV--LTFVVGANVEKLLCEP---YENKKLLQVLDTPYLLNDQWQFYL----SGIL 546

  Fly   602 VVQP---LKMSSAIKACHANQTIFDMMRQHNIYDINDLTRIKVMSHSQENTDSIKVFDE---DLS 660
            :..|   :......:.|...:.::...:..|:::|.:...|:.:|.     |.:|..::   ::.
  Rat   547 LKNPDINMTFEQVYRDCKRGRGVYATFQLENVFNITENFNIERLSE-----DIVKELEKLNVNID 606

  Fly   661 TVVLLTKEERDELKTAGESKLAKYHSSLYMPSLCTQFTPMNLNALSEQLYKLSNDLEYPAYGWAK 725
            ::.||.|..|..|:...:|.:.:.:.|:|:.......|.::|...:..|...:|.|   ..|..|
  Rat   607 SIELLDKTGRKSLEDFAQSGIDRINYSMYLQEAEKPPTKVDLLTFASFLETEANQL---PDGNLK 668

  Fly   726 VSFWNEGLNTKAFYRNFVPKLTSLVEKMKAN---LKKIDELISYENHDFTNTIKILTATAINSEQ 787
            .:|..:..|.:|.::..||.:...:..:|.:   ||:....:..|       :|.:.|:..:::.
  Rat   669 QAFLMDAQNIRAIHQQHVPPVQQSLNSLKQSVWALKQTSSKLPEE-------VKKVLASLDSAQH 726

  Fly   788 FIQTRGKDYINALGGNLTNSIDQMIDDYIDMIIKEANESVGHCAPLSYIYYRGVD-LICHRIVDP 851
            |:.:.....:.........:|....:.|:..::....|.:..|.|:.......|: ::|..:.||
  Rat   727 FLTSNLSSIVIGETKKFGRTIIGYFEHYLQWVLYAITEKMTSCKPMITAMDSAVNGILCSYVADP 791

  Fly   852 INGFWVGILLCALLFLPILFVAHRLMCLYKK-----IYPYLATVGAAGVVEGGS----DYLYDAY 907
            :|.||.||....:|.||.:.:|.:|...|::     :|..:.||....:..|.:    |:||.. 
  Rat   792 LNLFWFGIGKATMLLLPAVIIAIKLAKYYRRMDSEDVYDDVETVPMKNLENGSNGYHKDHLYGV- 855

  Fly   908 SERDREHVPLANVPKK 923
                  |.|:...|.:
  Rat   856 ------HNPVMTSPSR 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
promLNP_001261351.1 Prominin 76..881 CDD:283200 174/873 (20%)
Prom1XP_008768433.1 Prominin 18..821 CDD:398888 174/873 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354196
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4331
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46440
OrthoDB 1 1.010 - - D1129032at2759
OrthoFinder 1 1.000 - - FOG0002387
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105166
Panther 1 1.100 - - O PTHR22730
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1580
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.720

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