DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment promL and prom

DIOPT Version :9

Sequence 1:NP_001261351.1 Gene:promL / 38372 FlyBaseID:FBgn0026189 Length:1013 Species:Drosophila melanogaster
Sequence 2:NP_001137754.1 Gene:prom / 246493 FlyBaseID:FBgn0259210 Length:1235 Species:Drosophila melanogaster


Alignment Length:1069 Identity:220/1069 - (20%)
Similarity:367/1069 - (34%) Gaps:239/1069 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 AYLAICGLSVAIFGFALATLIRPTTAQADADPGSWRKGYVGHGTTHEQLGQPHWPPVQYTVYRPT 97
            |...|...|.|......|:|..|||:   |..||    .:...||....     ||..    .|.
  Fly    12 AATTIMSSSSAAMSAGFASLGGPTTS---ALTGS----TIALATTTTTA-----PPTT----TPA 60

  Fly    98 TNYTKAPPPPTSAMNPIFNFTHFLYDKVLYRDEPIPEGYI---VVKNSDTLSLGP---KVEENDW 156
            |.:|.:.|....|..| |.||:......|...|.:|...|   :.||:..|....   |:|..  
  Fly    61 TFFTYSIPGMDIAPGP-FIFTYVSEFLSLITPEELPLDSIRDVLHKNTSLLDFASNAIKIESG-- 122

  Fly   157 RDLLAHYWMVLIWVVILVVLIIVIPFIAVCYCCFCCCRRCRQ------GCPPCTSKQDAQ----- 210
                      .|.::.:..::.::|.||.  |.:||.||..|      ...||..:.::.     
  Fly   123 ----------FIALMSVFAILALVPLIAT--CAWCCGRRSTQEEVDHIRNAPCHIRDESLEESLR 175

  Fly   211 -RRFCCGICLLILIIGLIFGIIIAFVTNKMIDSGFAETSETMKRGSEDTCTYLKDV-------AD 267
             |:....:.|.::.|.|.......|..|..:.:|...|.|.:|....|...:|||.       .|
  Fly   176 CRKSAGLVTLWVVFILLTLSDFSIFYANSRLSAGIEMTPEMVKSAVHDVEVFLKDTHLQIKQKLD 240

  Fly   268 HVHHL----MMYNYEEMETHVLDQLTHAH--RHIFLDLS-DTSESNSLAEME---RVL---ENMP 319
            :..|:    ::.:.|:::. :|.:...|.  .|..|:|: |:..:.|||..|   |||   |.:.
  Fly   241 NGFHVSVERVVKDLEDVDV-LLGEPIQAEISAHTGLELAYDSLTTLSLANAELIYRVLMLQETVG 304

  Fly   320 EALELMRQVEKMEKDLRFYGSQLRDGVRGIKRDVNFAVANLCQLQMCQKFL---ISSNIEHIDSS 381
            .||:|.::.....::|:...|.|       :|...:....||.....:.|.   :...::.:...
  Fly   305 RALKLSQEAAARMEELQIQLSVL-------QRQCTYRDRPLCDTLRIRSFEENGVVDALKTLQED 362

  Fly   382 QCLHFDNLPNTKEFVEGMENIVASEYYAIPQRGLSR--LKKVSDKVKTQLSFVVPPMMRDLTKGR 444
            |.:.........||...::|:.:       :.|:||  ......:||...::.....:..|...|
  Fly   363 QSIFRMRYLGEIEFGATVKNLTS-------EVGVSRSIFSNFPQQVKHDTAYERNYTLEQLASIR 420

  Fly   445 TIFREHATNVRNIVEGVLSDIHIKTLHST-----------KSFEDVYERFGHDRNVVSLIVCLLI 498
            .....:|..:.:.|.|:|     :.|..|           |.:.|.|...|.....|        
  Fly   421 HRTTANAQQLTSTVNGLL-----RRLEDTWSSLQPAYNELKEWADAYWSVGWIAGTV-------- 472

  Fly   499 LLVLFILIFALL--CGCFGRRRTGYGDECCSKSTGATCLLLAILLIFCVFSF-IALVGLFYFMLG 560
              ::::::|.|:  | ||         .|.|.:.......:|::|| |:.|. :.:.|:|...:|
  Fly   473 --IVWVMLFMLMSYC-CF---------LCESNAKSGVVFFIAVMLI-CLASICLTIFGVFSLAVG 524

  Fly   561 MVTYQGACAPLRDQENNTLFRQLD-----------ASIDLNHYLPPSESNKEVVQPLKMSSAIKA 614
            .......|..|.|::.|.|.:.||           ..| :...|.|...|:.||. :.:..|::.
  Fly   525 GNAEVFVCRSLYDEDYNMLGKLLDKPGYAYAREPQTGI-IGELLRPVGVNRSVVN-VGLGQALRG 587

  Fly   615 CHANQ---TIFDMMRQHNIYDINDLTRIKVMSHSQENTDSIKVFDEDLSTVVLLTKEERDELKTA 676
            |..||   .:|.:....|...|.||.:...:|.:   .|:|.|....|.::....:...|.:...
  Fly   588 CEQNQASYNVFQLDAFVNTSKIADLRQFPKVSTA---IDAISVSGRTLLSLTQSVQNILDNMLQT 649

  Fly   677 GESKLAKYHSSLYMPS----LCTQFTPMNLNALSEQLYKLSNDLEYPAYG------WAKVSFWNE 731
            ....|..|.||:..|:    |.|....|...||  |:..::........|      .|.:....|
  Fly   650 SSFNLTTYRSSVGAPTPEKDLATFIDQMQRVAL--QIQDVATSSRMTTLGSRSKRLQASILQPLE 712

  Fly   732 GLNTKAFYRNFVPKLTSLVEKMKANLKKIDELISYENHDFTNTIKILTATAIN-SEQFIQTRGKD 795
            .|..:..|.     ||:|..:.....|::::.:   ||     :|.:.:...| :.:......:|
  Fly   713 NLQNEILYH-----LTALELQRDPWAKQVNQTL---NH-----LKSIQSYLENKAGEICHNMTRD 764

  Fly   796 YINALGGNLTNSIDQMIDDYIDMIIKEANESVGHCAPLSYIYYRGVDLICHRIVDPINGFWVGIL 860
            |.:.|...||.|...|.....|...|        |.|....:......:|..:||.|||....|.
  Fly   765 YRDRLKAYLTTSKATMESQLGDTTTK--------CRPFYDTFDASRTFLCRNMVDFINGLTFFIF 821

  Fly   861 LCALLF-------LPILFVAHRLMCLYKKIYPYLATVGAAGVVEGGSDYLYDAYSERDREHVPLA 918
            |..||:       |.::.|..||..:                                       
  Fly   822 LTLLLWAIGTPVGLNLITVQTRLNVM--------------------------------------- 847

  Fly   919 NVPKKRRKAYERRREQQDYFEDASPSVSRGNRSGGDRGGGGGDGAPGSSSMRYNDMAPTHWDHEP 983
            ...:.|.|...||.::....|..|.|..|..:........|..|....|  |....:.|.....|
  Fly   848 QAAQARSKGRHRRSDRSPEHEQRSGSRGRKKQRTSSSATSGRSGKRDQS--RERSTSSTARPKPP 910

  Fly   984 PR---------YHNPPAAPPSSEYERPPP 1003
            .|         ..:..:.|...:.::|||
  Fly   911 LRRTATEETLDLADEESTPSRQQQQQPPP 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
promLNP_001261351.1 Prominin 76..881 CDD:283200 189/893 (21%)
promNP_001137754.1 Prominin 73..826 CDD:283200 175/836 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4331
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3755
SonicParanoid 00.000 Not matched by this tool.
32.840

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