DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment promL and prom2

DIOPT Version :9

Sequence 1:NP_001261351.1 Gene:promL / 38372 FlyBaseID:FBgn0026189 Length:1013 Species:Drosophila melanogaster
Sequence 2:NP_001243221.1 Gene:prom2 / 100485371 XenbaseID:XB-GENE-853506 Length:788 Species:Xenopus tropicalis


Alignment Length:803 Identity:163/803 - (20%)
Similarity:299/803 - (37%) Gaps:219/803 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 VILVVLIIVIPFIAVCYCCFCC-----CRRCRQGCPPCTSKQDAQRRFCCGICLLILII----GL 226
            ||.::.:|.:....:.||.|.|     .:||             :..||..:.:.:|:.    .|
 Frog    60 VIAILFLIFMLVFGIIYCVFQCRGERIFKRC-------------EGMFCHRVPVFLLLFLTCTVL 111

  Fly   227 IFGIIIAFVTNKMIDSGFA----ETSETMKRGSEDTCTYLKDVADH---VHHLMMYNYEEMETHV 284
            :.|:|..|..|:.:...||    |.:::::|        .:...|:   |...:..::...:..|
 Frog   112 LAGVICTFCLNQKVQEEFAPGVYEVTDSLQR--------FRSSIDNLPLVLEKISSDFSIPKQKV 168

  Fly   285 LDQLTHAHRHIFLDLSDTSESNSLAEMERVLENMPEALELMRQVEKMEKDLRFYGSQLRDGVRGI 349
            ||:|                .:...::.|.|     :.:|.:::..:.:|......||::..:.:
 Frog   169 LDEL----------------QSFGPDINRTL-----SAKLNQEIYPLLQDSYQTAKQLKEAAQAV 212

  Fly   350 KRDVNFAVANLCQLQMCQKFLIS------SNIEH-IDSSQC----------------LHFDNLPN 391
            . |||.||.   .||..|..|::      .|:|. :..:||                .::..:|:
 Frog   213 V-DVNVAVK---LLQKSQSKLVAELSSHRQNLERTLSDTQCKECKEAAAIVPQLQQTANYSQIPS 273

  Fly   392 TKEFVEGMENIVASEYYAIPQRGLSRLKKVSDKVKTQLSFVVPPMMR--DLTKGRTIFREHATNV 454
            ..::|:.:..:.......|..:|:....::...|.||.|..:....:  |..:|:         :
 Frog   274 LDDYVKKLTQVRKINLTGIFLQGIRLFNEMPQFVITQASKSISETKKALDTIEGK---------I 329

  Fly   455 RNIVEGV-----LSDIHIKTLHSTKSFEDVY----ERFGHDRNVVSLIVCLLILLVLFILIFALL 510
            .:::..|     ...|| |.|...:....||    ||:.:.|.|:.:.:|.::||:.......||
 Frog   330 NSLISSVPIQQYTEPIH-KALLEAEEKSAVYGKEAERYEYYRWVIGITLCCVLLLITICTFLGLL 393

  Fly   511 CGCF-----------GRRRTGYGDECCSKSTGATCLLL--AILLIFCVFSFIALVGLFY--FMLG 560
            .|.:           ..|:|||             |||  .:.:.|| ||::.:: |.|  |::|
 Frog   394 LGVWYLYLQQDGVSSNLRQTGY-------------LLLKGEVYVSFC-FSWLLII-LVYVTFLVG 443

  Fly   561 MVTYQGACAPLRDQENNTLFRQLDASIDLNHYLPPSESNKE---VVQPLKMSSAIKACHANQTIF 622
            .......|.|   ..|..::..||   |.|: ||||.|...   :.:.:.:|...:.|.....|:
 Frog   444 GNVQTLLCEP---WANGEIYSFLD---DPNN-LPPSVSLSNRLGLREDVNISYMYQLCKEGAPIW 501

  Fly   623 DMMRQHNIYDIND----LTRIKVMSHSQENTDSIKVFDEDLSTVVLLTKEERDELKTAGESKLAK 683
            |:::      ::|    |..|.:..::.|..:.:..|..|||.:.::|......|.....|.:.|
 Frog   502 DVLQ------VDDPTGMLQSINITQYTAEIQNKVNNFTVDLSGLTIMTIIAIKTLYEYSHSGIEK 560

  Fly   684 --YHSSL--YMPSLCTQFTPMNLNALSEQLYKL----SNDLEYPAYGWAKVSFWNEGLNTKAFYR 740
              |.:.|  ..|.|.|    ::|..|:..|..|    :||.       .:....||. |.....:
 Frog   561 VPYDAMLAQIQPPLVT----LDLGHLASMLKSLATVQNNDT-------IRTQLQNEA-NALGGIQ 613

  Fly   741 NFVPKLTSLVEKMKANLKKI-DELISYENHDFTNTIKILTATAINSEQFIQTRGKDYINALGGNL 804
            |      ..|.:...:|.|: |.|.|...|        |.....|....|:.     |.:|...|
 Frog   614 N------GTVREQNVHLSKLNDSLHSLAEH--------LPNMQANINHTIEN-----IRSLQDTL 659

  Fly   805 TNSIDQMIDD---------------YIDMIIKEANESVGHCAPLSYIYYRGVD----LICHRIVD 850
            ...|.|::.:               |:|.:.|...|.|..|..:.    |.:|    ::|..|.:
 Frog   660 IGGIIQLLKNESTCLLRKAIAHFTQYLDWVTKLITEDVSSCQSVP----RTLDNIHTVVCDNITN 720

  Fly   851 PINGFWVGILLCALLFLPILFVA 873
            |.||||..:..|....:|.:.::
 Frog   721 PWNGFWFCLAWCTFFLIPNILLS 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
promLNP_001261351.1 Prominin 76..881 CDD:283200 163/803 (20%)
prom2NP_001243221.1 Prominin 38..745 CDD:368462 163/803 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 131 1.000 Domainoid score I5091
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 135 1.000 Inparanoid score I4451
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1129032at2759
OrthoFinder 1 1.000 - - FOG0002387
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22730
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1580
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

Return to query results.
Submit another query.