DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht7 and lmd-5

DIOPT Version :9

Sequence 1:NP_647768.3 Gene:Cht7 / 38370 FlyBaseID:FBgn0035398 Length:1013 Species:Drosophila melanogaster
Sequence 2:NP_001309512.1 Gene:lmd-5 / 187942 WormBaseID:WBGene00020141 Length:1518 Species:Caenorhabditis elegans


Alignment Length:448 Identity:129/448 - (28%)
Similarity:206/448 - (45%) Gaps:83/448 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SRSNLIESKKSTEAPEAEKRIDQITSATTTSARRTRLRSKAKLGAAAAGGAAVAAGGTALVASGS 109
            |..|:.|..|.:|.          .|:|..||..|             |.::|.|...       
 Worm   954 SWDNVCEEDKESED----------DSSTADSAEPT-------------GSSSVPAASC------- 988

  Fly   110 SLKGKKTKVDDGTPKIVCYYTNWSQYRV---KIGKFVPEDIPADLCTHIIFAF------GWLKKN 165
               ||         :||.|||.|.:..:   ::.|.          ||:||||      |.:|..
 Worm   989 ---GK---------RIVGYYTGWGEREITENQLKKL----------THVIFAFVAMYADGSVKFG 1031

  Fly   166 KLSSYESNDETKDNVPGLYERMMTLKK----ANPKLKILLALGGWSFGTQKFKDMSSTRYTRQTF 226
            .:|:.:...:......   .|.:.:||    .|..:::|.|:|||. .:|.|..:::....|:.|
 Worm  1032 PVSADDPGPQAGKKAE---RRFVDMKKKARAVNSGVRVLFAVGGWD-NSQYFSSVAADSGKRRNF 1092

  Fly   227 VYSAIPFLRKRGFDGLDMDWEYP--KGSDDKKNFVLLLKELREAFEAEA-QELKKPRLLLSAAVP 288
            |.|...|:.....||:|:|||||  ||. ||:|.|.|::||||.|...| :..:|...|::.|..
 Worm  1093 VDSVASFIEHHKIDGVDLDWEYPEMKGG-DKQNHVTLIRELRERFNGMASRNNRKDPYLITLASA 1156

  Fly   289 VGPDNIRGGYDVPAIASYLDFINLMAYDFHGKWERE----TGHNAPLYAPSTDSEWRKQLSVDNA 349
            .|..|:|.|||:..|.:|.||||:|.||::|.||.:    ||..||||..|... :..:|:.|.:
 Worm  1157 AGEWNLREGYDLKGILNYADFINVMTYDYYGAWESKWGAYTGTPAPLYFGSLKG-FSGKLNADFS 1220

  Fly   350 ASLWVKMGAPKEKLVIGMPTYGRSF-TLANPDKHGPNAPASGGGREGVYTKEGGFLAYYEICEML 413
            ...:........:|.:|:|.|||.: .:..|.....|...:...:.|.|  |||::.:..:.:..
 Worm  1221 MKFYACNTKKPSQLTMGVPFYGRYWKNVLEPIDASDNMWRTAAPQNGKY--EGGYVGWRNLEKEG 1283

  Fly   414 LNGAVYVWDDEMKVPYLVDGD--QWVGFDDERAIRNKMHWIKSNGFGGAMVWTIDMDD 469
            .|.....|..:.|.||:::..  .::||::||:::.||.:..:...||.|:|.:|:||
 Worm  1284 WNKGSATWHKKTKTPYIMNNGARMFLGFENERSLKEKMDYATNRNLGGLMIWALDLDD 1341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht7NP_647768.3 Glyco_18 124..468 CDD:214753 112/366 (31%)
GH18_chitolectin_chitotriosidase 125..491 CDD:119351 114/368 (31%)
Glyco_18 559..898 CDD:214753
GH18_chitolectin_chitotriosidase 560..919 CDD:119351
CBM_14 951..1005 CDD:279884
lmd-5NP_001309512.1 LysM 22..65 CDD:197609
LysM 77..120 CDD:197609
LysM 151..194 CDD:197609
LysM 220..260 CDD:197609
LysM 275..312 CDD:197609
LysM 386..429 CDD:197609
Self-incomp_S1 851..944 CDD:283566
Glyco_18 991..1336 CDD:214753 110/362 (30%)
GH18_chitinase-like 992..1336 CDD:299167 110/361 (30%)
ChtBD1_GH18_2 1388..1435 CDD:211315
ChtBD1_GH18_2 1462..1513 CDD:211315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14141
orthoMCL 1 0.900 - - OOG6_100224
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.710

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