DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scramb2 and scrm-8

DIOPT Version :9

Sequence 1:NP_647761.1 Gene:scramb2 / 38362 FlyBaseID:FBgn0035390 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_500501.1 Gene:scrm-8 / 187152 WormBaseID:WBGene00019530 Length:301 Species:Caenorhabditis elegans


Alignment Length:275 Identity:82/275 - (29%)
Similarity:130/275 - (47%) Gaps:38/275 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PQNAPQDENGAVVLQPQAANVG----NNANG------------PENWMSIPVGMPNCPQ--GLEY 57
            |:...||....   :|:|...|    |||..            |....::||.|....|  ....
 Worm    22 PEEVEQDSKKD---EPRAEGAGFGRRNNAGTKLPAARSTPMKIPNQVAAMPVQMTGFVQLASNNI 83

  Fly    58 LTAL---DQLLVSQKIEKLELLTGFETKNRFKVKNSLGQNVYFAYEESDCCTRNMLGRSRPFEMK 119
            |:|:   :.|:|.|.||.||:.|||||.||:.|.:...:.:.:..|.|:...|...|.:|.|.|:
 Worm    84 LSAIAHTNSLMVVQCIEPLEIFTGFETPNRYVVHDMYCRPLLYCMERSNVFARQYHGNNRNFGMQ 148

  Fly   120 ILDNFQNEVLHLY--RPFKCDILCCFPSCMNAVEVSAPPGQVIGSVEQVCTFMRPKFNIKNTCGD 182
            |:|....:|:..:  ||      ||  ||.:.:.... ..|.||.:::.|  ..|.|.:..:..:
 Worm   149 IMDTHGAQVMTCFRGRP------CC--SCDDFLSTQF-LDQQIGMMKREC--CNPNFELIGSGCN 202

  Fly   183 TVLQIEGPVCPCKCFSDTNFKVLSANNEEIGKISKQWSGLGRELFTDADYFSVTFPLNLDVRMKA 247
            ..|.|:.||| ..|.....|.|::.|...:|:|.:.:.|..:|:|||||.:.|.||:::...:|.
 Worm   203 QPLLIQSPVC-AGCGGTQKFPVMTYNGALVGEIVRLYPGFMQEMFTDADTYIVHFPMDMPPILKL 266

  Fly   248 LIFAALFLIDAVYYE 262
            |:..::||||..|:|
 Worm   267 LLVTSVFLIDFTYFE 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb2NP_647761.1 Scramblase 42..263 CDD:252175 72/228 (32%)
scrm-8NP_500501.1 Scramblase 72..282 CDD:252175 70/222 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165969
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0621
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1940
OMA 1 1.010 - - QHG28609
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X164
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.710

Return to query results.
Submit another query.