DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2162 and R3hcc1

DIOPT Version :9

Sequence 1:NP_001163332.2 Gene:CG2162 / 38360 FlyBaseID:FBgn0035388 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_001288580.1 Gene:R3hcc1 / 71843 MGIID:1919093 Length:502 Species:Mus musculus


Alignment Length:671 Identity:162/671 - (24%)
Similarity:257/671 - (38%) Gaps:242/671 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DQEFVHNVGCDIELF-VKKRLNRGVLLFPPVGNYRRYLIHQTCEKYRQQYDLF-TFSVGQGPQRR 64
            :.:|||.|..:::.| ::|:|:: |||||||.:..|||||:|.|    .:||. :||||:|.:||
Mouse    29 ENDFVHRVQEELDRFLLQKQLSK-VLLFPPVSSRLRYLIHRTAE----NFDLLSSFSVGEGWKRR 88

  Fly    65 TVLCFRNQLLDPSGFENRKQQQQREKDREREAARSWRSNNNSHYHTNGRSSSASRRSATELCKMG 129
            ||:|                                        |.:.|..|:...|..  |   
Mouse    89 TVIC----------------------------------------HLDIRVPSSDGPSGP--C--- 108

  Fly   130 VKKHISETPLSKSNSVDLYRPPALRNNSNNNNSSSEEAAAVNEAITTPLAAGTATTASTSPTSKE 194
                               ||||                                   :.|:...
Mouse   109 -------------------RPPA-----------------------------------SHPSKYR 119

  Fly   195 SPNREADASAAAA-----AAATRRERRPDRAVYVPRARRSQTTPPTTTTTTTAAA---------A 245
            .|...:...|||.     |....|.|:||:.:||||..|.|..|       .||:         |
Mouse   120 GPRYTSHQGAAAGPRGAPAGRWHRGRKPDQPLYVPRVLRRQGGP-------VAASIPGIKGEDPA 177

  Fly   246 TAVATTSPPAAAA-----------VVAATITTAPD----SPP---VADTQPSKADDVNGQPPSKS 292
            .||:...|..|.|           :|...:..:||    :.|   :.||:||             
Mouse   178 GAVSEEEPREAGAGDAEADQGIAMLVTQELLKSPDPGHANEPQMGLGDTEPS------------- 229

  Fly   293 KKSKSHRERRERAKKTTTATTADNATVLVISASENDTQSNEEHRPAKPADCDKEIMSGAQRTKPG 357
                   |..|:.:...||....:...|.:.      :.|..|......|.::|.:.|.:..|. 
Mouse   230 -------ENPEKEQGAETAVQQGSGAQLAME------EENRSHGMRSLVDQEEEEIEGEEEEKV- 280

  Fly   358 NGNKSASNGKSQASPPLRIEDVVAARSTNGEEPAKCDNDVRELQRASKEINRSNRRIMKQTFNSD 422
             ..|....||.:.    |:::  ....|:.:| .|.|::                          
Mouse   281 -DEKEEDTGKQKE----RVDE--EEEKTDAQE-GKVDSE-------------------------- 311

  Fly   423 VLEIPEKIETSATKAIPTSPQASATAKPPVDSTTEDDDEEDEDDWEKMFDESGDCLDPKLLQELT 487
                .|:::....|               ||:..||:||.|.|..:  |.|        ||||:|
Mouse   312 ----GERMDEGEDK---------------VDAEEEDEDEADADHGD--FSE--------LLQEIT 347

  Fly   488 ESVGKCKIELPKMDYTVFHIKQQLLNEEEFPHVLEVSNFPVEFKTPDLLMLFAQYRGSGFDIKWV 552
            .::.:.:|::.|:........::|..|.:..|::|:.:|....||.|||..|::::..||.|:||
Mouse   348 ANLTEKEIKIEKIHLDTSAFTEELPGERDLTHLVEIYDFKPTLKTEDLLATFSEFQEKGFRIQWV 412

  Fly   553 DDTHALAVFSSSRIAAEVLTMGHPFVKLKPLAEATLESRLKAKKAGAVSMQPYRQRPETCTALAR 617
            |||||:.:|.....|.|.|......:|::||.:.|.:|:|||.:.... ::..::||:|.:|:||
Mouse   413 DDTHAIGIFPCPASALEALAKDFSVLKIRPLTQGTKQSKLKALQRPKF-LRLSKERPQTDSAVAR 476

  Fly   618 RLVSGALGV------KLPTAP 632
            |||:.|||:      :|||.|
Mouse   477 RLVARALGLQHNRKKELPTPP 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2162NP_001163332.2 R3H 6..70 CDD:294210 32/65 (49%)
RRM_SF 519..583 CDD:302621 24/63 (38%)
R3hcc1NP_001288580.1 R3H_unknown_1 33..93 CDD:100067 32/104 (31%)
RRM_SF 379..443 CDD:302621 24/63 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167836917
Domainoid 1 1.000 57 1.000 Domainoid score I10936
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002567
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR21678
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3424
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.970

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