DRSC/TRiP Functional Genomics Resources

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Protein Alignment FMRFaR and valopa

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_571661.1 Gene:valopa / 58109 ZFINID:ZDB-GENE-000427-4 Length:377 Species:Danio rerio


Alignment Length:380 Identity:78/380 - (20%)
Similarity:154/380 - (40%) Gaps:63/380 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 EDVYNPLLENNRIEFW---VCGVLINIVGVLGILGNIISMIILSR-PQMRSSINYLLTGLARCDT 159
            ||.::..|.:  |..|   |...|:.:|..|.:..|...|::..| .|:|..:||::..|:..|.
Zfish    15 EDPFSAPLSS--IAPWNYSVLAALMFVVTALSLSENFTVMLVTFRFQQLRQPLNYIIVNLSLADF 77

  Fly   160 VLIITSILLFGIPSIYPYTGHFF-GYYNYVYPFISPAVFPIGMIAQTASIYMTFTVTLERYVAVC 223
            ::.:|.   ..|..:..|.|:|| |.:..|....:...|  |::|    ::....:..||:..:|
Zfish    78 LVSLTG---GSISFLTNYHGYFFLGKWACVLEGFAVTFF--GIVA----LWSLAVLAFERFFVIC 133

  Fly   224 HPL---KARALCTYGRAKIYFIVCVCFSLAYNMPRF--WEVLTV----TYPEP----GKDVILHC 275
            .||   :.|.    ..|.:..:....||..:.:|..  |...||    |..||    |.   .| 
Zfish   134 RPLGNIRLRG----KHAALGLVFVWSFSFIWTVPPVLGWSSYTVSRIGTTCEPNWYSGN---FH- 190

  Fly   276 VRPSRLRRSETYINIYIHWCYLIVNYIIPFLTLAILNCLIYRQVKRANRERQRLSRSEKREIGLA 340
                    ..|:|......|     :|.|...:.:..|.:.|::::.:....||..:.|.| ...
Zfish   191 --------DHTFIITLFSTC-----FIFPLGVIIVCYCKLIRKLRKVSNTHGRLGNARKPE-RQV 241

  Fly   341 TMLLCVVIVFFMLNFLP-----LVLNISEAFYSTIDHKITKISNLLITINSSVNFLIYIIFGEKF 400
            |.::.|:||.||:.:.|     :::....:.:  :|.::..|...:....:..|.:||:...::|
Zfish   242 TRMVVVMIVAFMVAWTPYAAFSIIITAHPSMH--VDPRLAAIPAFVAKTAAVYNPIIYVFMNKQF 304

  Fly   401 KRIFLLIFFKRRLSRDQPDLIHYESSISNNGDGTLNHRSSGRFSRHGTQRSTTTT 455
            ::..:.:     ||..:..::...::.:....|..:..::|..|....:.|...|
Zfish   305 RKCLVQL-----LSCSKVTVVEGNNNQTTERAGMTSGSNTGEMSAIAARVSVPKT 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 62/291 (21%)
7tm_1 130..393 CDD:278431 59/282 (21%)
valopaNP_571661.1 7tm_1 47..297 CDD:278431 59/282 (21%)
7tm_4 <95..314 CDD:304433 50/253 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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