DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FMRFaR and frpr-12

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001343680.1 Gene:frpr-12 / 259953 WormBaseID:WBGene00019445 Length:388 Species:Caenorhabditis elegans


Alignment Length:376 Identity:98/376 - (26%)
Similarity:175/376 - (46%) Gaps:70/376 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 QNNSQPTLQIVLNHTEVQTDLQY--PHYEDLGLDPDPNWTRICEDVYNPLLENNRIEFWVCGVLI 120
            :|:...|..|:..:...:.:|:|  |:..|.......::|  ..:|::.             |::
 Worm    10 RNSISTTPPIIDYYGRTRFELEYMLPNSTDFPTSNVQSYT--LNEVFSM-------------VML 59

  Fly   121 NIVGVLGILGNIISMIILSRPQM-RSSINYLLTGLARCDTVLIITSILLFGIPSIYPYTGHFFGY 184
            .|: ::|:|||.:|:.:.||..| :::|.:||..|:..|.::::|::..||     .|...||..
 Worm    60 PII-LIGLLGNTVSIYVYSRNHMKKNTIGFLLLSLSTIDLIVLVTALPTFG-----TYKFPFFPG 118

  Fly   185 YN---------------YVYPFISPAVFPIGMIAQTASIYMTFTVTLERYVAVCHPLKARALCTY 234
            ||               |:|||        |.:|:....|:...:.:||:.|||.||:.:..||.
 Worm   119 YNKIGSAHTIFSAFCLVYIYPF--------GCMAKMIGQYIIVLIAVERWFAVCRPLQVQVWCTQ 175

  Fly   235 G---RAKIYFIVCVCFSLAYNMPRFWEVLTVTYPEPGKDVILHCVRP--SRLRRSETYINIYIHW 294
            .   ||.:|.|   ..|:::|.|||.|...        |:....|..  |....:..|..:|...
 Worm   176 KNTIRAMLYII---AISISFNAPRFLEFTA--------DLSTGVVNMGLSHSANNTWYFYLYYGI 229

  Fly   295 CYLIVNYIIPFLTLAILNCLIYRQVKRANRERQRLSRSEKREIGLATMLLCVVIV-----FF--M 352
            ..:..:.:|||..:::.|..:.:|:.::|.||:.|:..:::|....||||.:||:     ||  .
 Worm   230 RSIFFDALIPFAIISVTNIQVIQQLHKSNEERKLLTTQQQKEKRTTTMLLVMVILYATCHFFNTT 294

  Fly   353 LNFLPLVLNISEAFYSTIDHKITKISNLLITINSSVNFLIYIIFGEKFKRI 403
            |.|:.:|......|...:...|..|||||:.|.|:....||:||..|::::
 Worm   295 LKFINMVSKTYAQFRFPVIRVIHHISNLLLVIYSASTVFIYLIFSTKYRKV 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 84/299 (28%)
7tm_1 130..393 CDD:278431 80/290 (28%)
frpr-12NP_001343680.1 7tmA_FMRFamide_R-like 53..346 CDD:320109 90/331 (27%)
TM helix 1 54..78 CDD:320109 7/37 (19%)
TM helix 2 87..109 CDD:320109 5/21 (24%)
TM helix 3 135..157 CDD:320109 7/29 (24%)
TM helix 4 180..196 CDD:320109 6/18 (33%)
TM helix 5 225..248 CDD:320109 4/22 (18%)
TM helix 6 272..297 CDD:320109 9/24 (38%)
TM helix 7 314..339 CDD:320109 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BKGC
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H44567
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001391
OrthoInspector 1 1.000 - - otm14088
orthoMCL 1 0.900 - - OOG6_109179
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.670

Return to query results.
Submit another query.