DRSC/TRiP Functional Genomics Resources

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Protein Alignment FMRFaR and frpr-16

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_495204.1 Gene:frpr-16 / 187838 WormBaseID:WBGene00020023 Length:340 Species:Caenorhabditis elegans


Alignment Length:383 Identity:98/383 - (25%)
Similarity:170/383 - (44%) Gaps:88/383 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 NRIEF-----WVCGVLINIVGVLGILGNIISMIIL-SRPQMRSSINYLLTGLARCDTVLIITSIL 167
            ||.||     |:...:|    .:|:|||..|.::. :.|..:|::..||..|:..|.:|:|....
 Worm     2 NRYEFYELKSWMYLPVI----FIGLLGNFASFLVYRTAPMRKSTVGTLLLILSLIDILLLILITP 62

  Fly   168 LFGIPSI---------YPYTGHFFGY-YNYVYPFISPAVFPIGMIAQTASIYMTFTVTLERYVAV 222
            :|.:..:         |.:...||.| ..|||        |:.|:.::.|:|:...:|:||::||
 Worm    63 IFVLVFLPLWQDQWQKYSFHMSFFAYSTRYVY--------PLCMMTKSCSLYLMVLITIERWIAV 119

  Fly   223 CHPLKARALCTYG---RAKIYFIVCVCFSLAYNMPRFWEVLTVTYPEPGKDVILHCVRPSRLRRS 284
            |.||:|:.|||..   :|.|:.|:   ||:.:|.|||::.      :.|...:           |
 Worm   120 CRPLQAKVLCTNRNTMKAGIFIII---FSIVFNFPRFFDY------KIGDGYL-----------S 164

  Fly   285 ETY-INIYIHWCY---------LIVNYIIPFLTLAILNCLIYRQVKRANRERQRLSRSEKREIGL 339
            |.: ::...||.|         :|.:|.:|||.:.|.|..:.|.::.::.....|:..::::...
 Worm   165 EMWMLDTEKHWWYFMFYFIILSVIFDYFLPFLIMTIANYHVIRALQESDEVITGLAVQKRKDQKT 229

  Fly   340 ATMLLCVVIVFFMLNFLPLVLNISE----------AFYSTIDHKITKISNLLITINSSVNFLIYI 394
            ..|||.|.|.|...:...:.|.::|          :||..:   ..:.:..||..::|..|.||.
 Worm   230 TVMLLVVTIFFAFCHLFSMFLKVAESIFGGFLTQTSFYWEV---FAEFTIFLIIFHTSSTFFIYY 291

  Fly   395 IFGEKFKRIFLLIFFKRRLSRDQPDLIHYESSISNNGDGT-LNHRSSGRFSRHGTQRS 451
            .|.|||:.||             .|:|.....:.:....| |...|||..|...|:::
 Worm   292 GFSEKFRTIF-------------HDIIRCRQRLDDVKCSTYLPVNSSGAVSESKTRKA 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 76/305 (25%)
7tm_1 130..393 CDD:278431 73/296 (25%)
frpr-16NP_495204.1 7tmA_FMRFamide_R-like 13..301 CDD:320109 82/322 (25%)
TM helix 1 13..34 CDD:320109 6/24 (25%)
TM helix 2 48..70 CDD:320109 5/21 (24%)
TM helix 3 91..113 CDD:320109 7/29 (24%)
TM helix 4 136..152 CDD:320109 6/18 (33%)
TM helix 5 180..203 CDD:320109 6/22 (27%)
TM helix 6 227..252 CDD:320109 7/24 (29%)
TM helix 7 269..294 CDD:320109 6/27 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I3100
eggNOG 1 0.900 - - E33208_3BKGC
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H44567
Inparanoid 1 1.050 161 1.000 Inparanoid score I2850
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001391
OrthoInspector 1 1.000 - - otm14088
orthoMCL 1 0.900 - - OOG6_109179
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.720

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