DRSC/TRiP Functional Genomics Resources

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Protein Alignment FMRFaR and srsx-9

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_504336.2 Gene:srsx-9 / 185000 WormBaseID:WBGene00017845 Length:293 Species:Caenorhabditis elegans


Alignment Length:312 Identity:59/312 - (18%)
Similarity:132/312 - (42%) Gaps:47/312 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 VLGILGNIISM-IILSRPQMRSSINYLLTGLARCDTVLIITSIL---LF-GIPSIYPYTGHFFGY 184
            |.|.:||.:.: :|..|.|:::.     |.:.:|......|..|   || ||.::    ||.|..
 Worm    20 VFGTIGNSLFIHLIFKRKQLQTR-----TSVLQCFQCSFQTFCLFGTLFDGIINL----GHSFNR 75

  Fly   185 YNYVYPFISPAVFPIGMIAQTASIYMTFTVTLERYVAVCHPLKARAL--CTYGRAKIYFIVCVCF 247
            ....:. ||..:|     .|.|...:...:.::..:.|.:|...|::  .||..| ..|.|.:|.
 Worm    76 RECFWQ-ISFYIF-----FQAAQGIIMLVIVIDILIFVKYPFFYRSISFSTYLIA-TSFPVLMCS 133

  Fly   248 SLAYNMPRFWEVLTVTYPEPGKDVILHCVRPSRL-RRSETYINIYIHWCYLIVNYIIPFLTLAIL 311
            ::         |...:|....::||..||....| .::.|...::|.:..:||..:...|     
 Worm   134 TV---------VTAYSYYSVNEEVINTCVPMFVLSNQASTVYKLFIIFINIIVTVVYVIL----- 184

  Fly   312 NCLIYRQVKRANRERQRLSRSEKREI-GLATMLLCVVIVFFMLNFLPLVLNISEAFYSTIDHKIT 375
                   ::..:.::|..:.:..:.| ||...:...:..:|....:.|:: :.:...|:.::.|.
 Worm   185 -------IRTFHLKKQTGNLTSLKTIKGLQFSVSIFIFTWFFSQIIALLI-LKQYSSSSWENIIY 241

  Fly   376 KISNLLITINSSVNFLIYIIFGEKFKRIFLLIFFKRRLSRDQPDLIHYESSI 427
            ..::.|::::.|..|.:.:...:::::.|..|::..|.:.:...:.:..|.:
 Worm   242 MHNSFLMSLSYSNTFYVTLWKSKEYRKQFKNIWYPERTNENALTVFYTHSLV 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 55/277 (20%)
7tm_1 130..393 CDD:278431 53/271 (20%)
srsx-9NP_504336.2 TM helix 1 16..36 CDD:341315 5/15 (33%)
7TM_GPCR_Srsx 19..274 CDD:255903 56/291 (19%)
TM helix 2 43..66 CDD:341315 6/22 (27%)
TM helix 3 78..108 CDD:341315 5/35 (14%)
TM helix 4 118..135 CDD:341315 6/17 (35%)
TM helix 5 160..183 CDD:341315 4/22 (18%)
TM helix 6 201..227 CDD:341315 5/25 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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