DRSC/TRiP Functional Genomics Resources

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Protein Alignment FMRFaR and frpr-4

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001309544.1 Gene:frpr-4 / 183763 WormBaseID:WBGene00016909 Length:362 Species:Caenorhabditis elegans


Alignment Length:379 Identity:103/379 - (27%)
Similarity:182/379 - (48%) Gaps:66/379 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 RICEDVYNPLLENNRIEFWVCGVLINIVGVLGILGNIISMIILSRPQMRSSINYLLTGLARCDTV 160
            ||...||.|.:                  ::|:|||::|:...||...:|.:.:||..|:..|..
 Worm     9 RIMAFVYLPTI------------------LIGLLGNLLSLYAYSRKNRKSMVGFLLYSLSVSDIF 55

  Fly   161 LIITSILLFGIPSIYPYTGHFFGYYNYVYPFISPAVFPIGMIAQTASIYMTFTVTLERYVAVCHP 225
            |::.::.||.|..:..:|..   ..::|..:.:..|:|:.|:|:|.|:|:...:|:||::|||.|
 Worm    56 LLVFALPLFSIMYLPIWTDE---QRSFVVAYTAKYVYPLCMMAKTCSLYIMVLITIERWIAVCRP 117

  Fly   226 LKARALCTYGRAKIYFIVCVCFSLAYNMPRFWEVLTVTYPEPGKDVILHCVRPSRLRRSETYINI 290
            |:.:..|.|..:.......:.|::..|..||:| ..:.|.:.     |...|...|...:     
 Worm   118 LEVQIWCRYTTSSYSIAAIITFAVVLNFARFFE-FEIEYIDG-----LAFFRRDLLDSEK----- 171

  Fly   291 YIHWCY---------LIVNYIIPFLTLAILNCLIYRQVKRANRERQRLSRSEKREIGLATMLLCV 346
              ||.|         :|.:|::||:.:.:.|.||..:::|..:||..::..:::|.....|||.:
 Worm   172 --HWWYFMFYFIIISIIFDYLVPFVIMFVANMLIISELRRTKKERSLMTIQQQKEQNTTVMLLVI 234

  Fly   347 VIVFFMLNFLPLVLNISEAF---YSTIDH----KITKISNLLITINSSVNFLIYIIFGEKFKRIF 404
            .|.|...:|..:.|.::|:|   :.||.:    .:.:|.|.||.|:::..|.||.:|.|||::|.
 Worm   235 TIFFGFCHFFSMALKLAESFVGKFLTIQNIYLEMLGEIFNYLIIIHTASTFFIYYMFSEKFRQII 299

  Fly   405 LLIFFKRRLSRDQPDLIHYESSISNNGDGTLNHRSS--GRFSRHGTQRSTTTTY 456
            ..|:        :||...:.|.    .|||||...|  .:.:|||:  ||...|
 Worm   300 KGIW--------KPDQYRHGSL----PDGTLNITDSKKRKINRHGS--STKIMY 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 76/287 (26%)
7tm_1 130..393 CDD:278431 73/278 (26%)
frpr-4NP_001309544.1 7tmA_FMRFamide_R-like 33..299 CDD:320109 76/281 (27%)
TM helix 2 43..65 CDD:320109 6/21 (29%)
TM helix 3 86..108 CDD:320109 7/21 (33%)
TM helix 4 131..147 CDD:320109 2/15 (13%)
TM helix 5 178..201 CDD:320109 4/22 (18%)
TM helix 6 225..250 CDD:320109 7/24 (29%)
TM helix 7 265..292 CDD:320109 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 134 1.000 Domainoid score I3100
eggNOG 1 0.900 - - E33208_3BKGC
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H44567
Inparanoid 1 1.050 161 1.000 Inparanoid score I2850
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001391
OrthoInspector 1 1.000 - - otm14088
orthoMCL 1 0.900 - - OOG6_109179
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.720

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