DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FMRFaR and sri-25

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_506760.1 Gene:sri-25 / 183386 WormBaseID:WBGene00005537 Length:323 Species:Caenorhabditis elegans


Alignment Length:345 Identity:67/345 - (19%)
Similarity:130/345 - (37%) Gaps:97/345 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 IEFWVCGVLIN---IVGVLGIL--GNIISMIILSRPQMRSSINYLLTGLARCDTVLIITSILLFG 170
            |:|.|...||:   ..|.:.:|  |.:|.::|....::.|...|||:....|  ||:...:.:..
 Worm     5 IDFEVPNFLIHHYYASGSISVLLNGLVIYLLIFHNGKIGSFKFYLLSFQISC--VLLDLHVTMLM 67

  Fly   171 IP-SIYPYTGHFFGYYNYVYPFISPAVFPIGMIAQTASIYMTFTVTLERY--------VAVCHPL 226
            .| .:.|...   ||.|             |::::...::....:||..:        :.:|...
 Worm    68 QPVGLLPICA---GYSN-------------GILSKVFKLHSHILMTLFVFFLSLQINTLIICFLR 116

  Fly   227 KARALCTYGRAK-----IY-----FIVCVCFSLAYNMPRFWEVLTVTYPEPGKDV-ILHCVRPSR 280
            |.:|:.......     ||     .||.:.:||.:.:    .:.:.:|.:..:.: |.|.:..::
 Worm   117 KHKAIMNLRSTSSVPNWIYHVLLGMIVFLIWSLTFTL----SMSSESYEKQLEMLDIFHPLVSTK 177

  Fly   281 LRRSETYINIYIHWCYLIVNYIIPFLTLAILNCL------------IYRQVKRANRE--RQRLSR 331
            .|....:...|::...||      |.||.|...:            :||.:|....:  .|.|::
 Worm   178 FRNLPEFQYYYLNTWMLI------FFTLTIFETMKSFLMVSGTVTQMYRALKEVECQLSSQTLAK 236

  Fly   332 SEKREIGL----AT---------MLLCVVIVFFMLNFLPLVLNISEAFYSTIDHKITKISNLLIT 383
            .:.....|    ||         |:.|.||                 |.:....||:....:::|
 Worm   237 HKSALRSLIAQFATTPVAILPGGMIACTVI-----------------FPTEYSQKISWCCMMVMT 284

  Fly   384 INSSVNFLIYIIFGEKFKRI 403
            .:|::|.|:.|:...:|::|
 Worm   285 THSTLNSLVVILTYPEFRKI 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 59/320 (18%)
7tm_1 130..393 CDD:278431 57/309 (18%)
sri-25NP_506760.1 7TM_GPCR_Sri 3..305 CDD:287317 67/345 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.