DRSC/TRiP Functional Genomics Resources

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Protein Alignment FMRFaR and C39B10.1

DIOPT Version :9

Sequence 1:NP_001261347.1 Gene:FMRFaR / 38357 FlyBaseID:FBgn0035385 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_509754.1 Gene:C39B10.1 / 183330 WormBaseID:WBGene00008021 Length:583 Species:Caenorhabditis elegans


Alignment Length:381 Identity:72/381 - (18%)
Similarity:150/381 - (39%) Gaps:85/381 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 NNSQPTLQIVLN-----HTEVQTDL------QYPHYEDLGLDPDPNWTRICEDVYNPLLENNRIE 112
            |.:.||:....|     ||....::      :|.||:.....            ||         
 Worm     4 NTTWPTIDWCFNMEMWLHTMATQNISQQMRSKYAHYKTFSYR------------YN--------- 47

  Fly   113 FWVCGVLINIVGVLGILGN--IISMIILSRP-QMRSSINYLLTGLARCDTVLIITSILLFGIPSI 174
                |:|..::.:||:.|:  ::..|..||. ..|.:::  |..:...|.:.::..:..:.|||:
 Worm    48 ----GLLTLVLILLGLTGSSLLLKQIYGSRVFSKRLAVH--LGMICFWDIIYLLCCLSTYCIPSL 106

  Fly   175 YPYTGHFFGYYNYVYPFISP-AVFPIGMIAQTASIYMTFTVTLERYVAVCHPLKARALCTYGRAK 238
            .......:|.::|:..|:.| |.|.:     :.:|:..|.:|||||:||..||:.|.     |..
 Worm   107 IYSVTPIYGPFSYILFFLQPFASFCV-----SCTIWQVFAITLERYLAVSSPLEQRT-----RKA 161

  Fly   239 IYFIVCVCFSLAYNMPRFWEVLTVTYPEPGKDVILHCVRPS------RLRRSETYINIYIHWCYL 297
            .:.:..:|.::.     |...:....|.|.::.::.|...:      .:.|:.|.:..|......
 Worm   162 KFGVGWICVAIT-----FCAFILNLLPVPFENELVDCYEINFDSNGLPMFRNHTMMKPYYDDKIR 221

  Fly   298 IVNYIIPFL---------TLAILNCLIYRQVKRANRER-------QRLSRSEKREIGLATMLLCV 346
            |..:::.|.         .:.::..|..:.::..::..       .|.:|:....:.|......:
 Worm   222 IYRFLVHFFPDLLFRAPTPIIVIGTLTVKTIQACSQRSVGNFQIGMRFNRNMPLRLSLLNFKFIL 286

  Fly   347 VIVFFMLNFLPLVL----NISEAFYSTIDHK--ITKISNLLITINSSVNFLIYIIF 396
            ....:|.|.:.|.|    |:....|....:.  :|..||:|:.::|:.|:|::..|
 Worm   287 CNTLYMFNTILLELLEYGNMENGDYDGYINSFYLTDASNMLLVVHSATNWLLFYKF 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FMRFaRNP_001261347.1 7tm_4 122..394 CDD:304433 58/303 (19%)
7tm_1 130..393 CDD:278431 56/294 (19%)
C39B10.1NP_509754.1 7tmA_FMRFamide_R-like 69..344 CDD:320109 56/291 (19%)
TM helix 2 80..102 CDD:320109 2/23 (9%)
TM helix 3 122..144 CDD:320109 6/26 (23%)
TM helix 4 167..184 CDD:320109 2/21 (10%)
TM helix 5 226..249 CDD:320109 2/22 (9%)
TM helix 6 271..296 CDD:320109 4/24 (17%)
TM helix 7 318..343 CDD:320109 8/25 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46641
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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