DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and KCNQ4

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_004691.2 Gene:KCNQ4 / 9132 HGNCID:6298 Length:695 Species:Homo sapiens


Alignment Length:705 Identity:147/705 - (20%)
Similarity:263/705 - (37%) Gaps:201/705 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   415 QRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKP-NTSFAARVIAVISILFIVLS 478
            ||....|:..|:                    .|.:::.:||:| ..:|...|.    |..:|.|
Human    71 QRSSAAHKRYRR--------------------LQNWVYNVLERPRGWAFVYHVF----IFLLVFS 111

  Fly   479 TIALT-LNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR-FSAS--------PDKWKFF 533
            .:.|: |:|:.:.|.:.|..      |.::|.|.|..|.||||:| :||.        ..:::|.
Human   112 CLVLSVLSTIQEHQELANEC------LLILEFVMIVVFGLEYIVRVWSAGCCCRYRGWQGRFRFA 170

  Fly   534 KGGLNIIDLLAILPYFVSLFLLETNKN--ATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSL 596
            :....:||.:..:. .|::....|..|  ||...:.:       |.::|||::::.|.....:.|
Human   171 RKPFCVIDFIVFVA-SVAVIAAGTQGNIFATSALRSM-------RFLQILRMVRMDRRGGTWKLL 227

  Fly   597 GFTLRNSYKELGLLMLFLAMGVLIFSS-LAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIY 660
            |..:....||| :...::...||||:| |.|.|||| .::.|.|..::.||..||:||:||||..
Human   228 GSVVYAHSKEL-ITAWYIGFLVLIFASFLVYLAEKD-ANSDFSSYADSLWWGTITLTTIGYGDKT 290

  Fly   661 PTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRR-------------EAL 712
            |.|.||:|:.....:.|:...|||..|:.:.||...:.|.|::...|||             .:.
Human   291 PHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQAAWRLYST 355

  Fly   713 DRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDVQSAPG 777
            |.::...:...:::.::..:|.:...|.:.:                |...|.|.:.|:|:.|| 
Human   356 DMSRAYLTATWYYYDSILPSFRELALLFEHV----------------QRARNGGLRPLEVRRAP- 403

  Fly   778 HNLSQTDGNSTEGESTSGRNPATTGTGCYK-----------NYDHVANLRNSNLHNRRGSSSEQD 831
                ..||      :.|...|..|   |::           :...:.:........||...|:|.
Human   404 ----VPDG------APSRYPPVAT---CHRPGSTSFCPGESSRMGIKDRIRMGSSQRRTGPSKQH 455

  Fly   832 AVPPYSFDNPNARQTSMMAMESYRREQQALLQQQQQQQQQMLQMQQIQQKAPNGNGGATGGGVAN 896
            ..||....:|::.|.......:..::..:...:.:.:....|:.:...:.||:..       ||.
Human   456 LAPPTMPTSPSSEQVGEATSPTKVQKSWSFNDRTRFRASLRLKPRTSAEDAPSEE-------VAE 513

  Fly   897 NLA----------MVAASSAATAV----------------------------------------A 911
            ..:          |.|..:...::                                        :
Human   514 EKSYQCELTVDDIMPAVKTVIRSIRILKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKS 578

  Fly   912 TATNASNASNTAPGSEGAEGGGD---GDGGGVDDDNLSQAKGLPIQMMITPGEVAELRRQVALEN 973
            ..|.........||...|...||   .|...||:          |.||   |.|.::.:||    
Human   579 LQTRVDQIVGRGPGDRKAREKGDKGPSDAEVVDE----------ISMM---GRVVKVEKQV---- 626

  Fly   974 LQNQRMDNLEQDVPVEFECCFCTTKDFKEFTDAE-GVISLP------TSDFHKPI 1021
               |.::: :.|:.:.|     .::..:..|.|. |.:.:|      |||:|.|:
Human   627 ---QSIEH-KLDLLLGF-----YSRCLRSGTSASLGAVQVPLFDPDITSDYHSPV 672

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity