DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcnc4

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001182125.1 Gene:kcnc4 / 799410 ZFINID:ZDB-GENE-060503-773 Length:603 Species:Danio rerio


Alignment Length:577 Identity:200/577 - (34%)
Similarity:297/577 - (51%) Gaps:99/577 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 PPEPFMIAQSKA---VNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSL 354
            ||....:.:..|   .:.::.|||||.|||....||..:|.:||..|.: |..:...:.....:.
Zfish    19 PPSKSCLKEEMARCEDSDKIIINVGGTRHETYRSTLRTIPGSRLAWLAD-TDSQVNPDADTGQTH 82

  Fly   355 ADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKE- 418
            .::|:||||||..|:.:||:|||||||...::|...|.::|.:||:||..:|.||...|.|.:: 
Zfish    83 PNSEFFFDRHPGIFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDA 147

  Fly   419 ----NVHE----EMRKEAESLRQR----DEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVIS 471
                ::.|    |..::.:.:.:|    |..:...|.|..:|..:|.|.|.|.:|.||||||.:|
Zfish   148 EEALDIFEPPDPEDAEDDQDMPRRFGIEDSPDRSRGCCEVWQPKIWALFEDPYSSRAARVIAFVS 212

  Fly   472 ILFIVLSTIALTLNTLPQL----QHID-----NGTP-----QDNPQLAMVEAVCITWFTLEYILR 522
            :.||::|.....|.|....    .|.|     |.|.     ...|.|.:||.:|:.|||.|:::|
Zfish   213 LFFILVSITNFCLETHEAFFEFHNHTDTKSATNSTTIIQVMDTKPVLTVVEGICVVWFTFEFLVR 277

  Fly   523 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLL-ETNKNATDQFQDVRRVVQVFRIMRILRILKL 586
            ....|:|..|.|..|||||.:||||:::...|: .|:|.|    :||...::|.|.:|||||.||
Zfish   278 IICCPNKLLFIKNQLNIIDFVAILPFYLERSLIGNTSKAA----KDVLGFLRVVRFVRILRIFKL 338

  Fly   587 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKD---------TKFVSIPE 642
            .||..||:.||.|||.|..|..||::|||:|||||:::.|:||:...|         |.|.:||.
Zfish   339 TRHFVGLRVLGHTLRASVNEFCLLIIFLALGVLIFATMIYYAERISADPDDPSGCNHTHFKNIPI 403

  Fly   643 TFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALK 707
            .||||.:||||:||||:.|.|.||.::|.:|.|.|||.||:|:|:|||||..:|...|.::|..|
Zfish   404 GFWWAVVTMTTLGYGDMVPKTWLGMIVGALCAIAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPK 468

  Fly   708 RREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTG----KQTNVVHPKGKRQS------- 761
            :::.             |:.|           ..:::|:|    .::|  .|:...||       
Zfish   469 KKKK-------------HNPN-----------PGMVLDSGSFGKSESN--SPRNSTQSDTCPLAA 507

  Fly   762 TPNIGRQTLDVQSAPGHNLSQTDGNST----EGESTSGRNPATTG----TGCYKNYD 810
            ..||.|...|         |:.:|::|    |.|..|...|.:.|    ..|.:|.|
Zfish   508 EENITRNRSD---------SKQNGDATVTLSEEEGCSLTQPLSPGERWTLRCSRNRD 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 43/106 (41%)
BTB_2 309..408 CDD:280393 40/98 (41%)
Ion_trans 501..700 CDD:278921 99/208 (48%)
Ion_trans_2 613..696 CDD:285168 47/91 (52%)
kcnc4NP_001182125.1 amino terminal assembly domain 1..206 60/187 (32%)
Potassium_chann 1..29 CDD:288290 2/9 (22%)
BTB 38..144 CDD:197585 43/106 (41%)
BTB_2 38..136 CDD:280393 40/98 (41%)
S1-S6 membrane domain 207..516 126/338 (37%)
Ion_trans 248..461 CDD:278921 99/216 (46%)
Ion_trans_2 365..451 CDD:285168 43/85 (51%)
post S6 proximal carboxyl terminal domain 517..581 12/48 (25%)
distal carboxyl terminus 582..603
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.