DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcng1

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001103880.1 Gene:kcng1 / 796774 ZFINID:ZDB-GENE-080220-5 Length:521 Species:Danio rerio


Alignment Length:462 Identity:176/462 - (38%)
Similarity:269/462 - (58%) Gaps:25/462 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 PTHSQSNTTGALQRTHSRSMSSIPPPEP-FMIA-------QSKAVNSRVSINVGGVRHEVLWRTL 325
            |.|.|.    ||:..:.:....:||.:| |..|       .|.|....|.|||||:|::..|.||
Zfish    28 PVHEQE----ALKGVYYKRAQRLPPTDPNFTDALHPDASLPSCAQRLHVIINVGGLRYQFPWTTL 88

  Fly   326 ERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLA 390
            |..|.:|||:||.|:|.:.|:.:||||.:..||:||||.|.:|.:||.|.|.|||..:.|||.|:
Zfish    89 EDFPLSRLGQLRLCSTFDEIMHICDDYDVVHNEFFFDRSPCAFRTILTFLRAGKLRSLREMCALS 153

  Fly   391 FSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFG---EGKCAEYQKYLW 452
            |.::|.||||.|..||.||:.:..||.|...|..|...|.....|:.|.|   |.:.......|.
Zfish   154 FQEELLYWGVPEESLEWCCRRRLLQRVEECDELERVAEEDEEDEDDSESGLARESRLGRCMGKLR 218

  Fly   453 ELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHID--NGTPQDNPQLAMVEAVCITWF 515
            :::|||::....::.|.:|:||:.::.|.|:::|:|.::..:  ....|....:.:||.||:.||
Zfish   219 DMVEKPHSGLPGKIFACLSVLFVTITAINLSISTMPAMREEEETGKCSQMCYNIFIVETVCVAWF 283

  Fly   516 TLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNK------NATDQFQDVRRVVQV 574
            :||:.|||.....|..|.:..||:||::|||||:::|.:..|:.      :.:.....|..|::|
Zfish   284 SLEFTLRFIQDRSKLAFLRRPLNLIDVIAILPYYITLVVDSTSTGEKRLGSGSSYLDKVGLVLRV 348

  Fly   575 FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTK-FV 638
            .|.:|||.:::|||||.|||:||.|.|...:|.|||:|||.:.:.:||.|.|..|.:...|: |.
Zfish   349 LRALRILYVMRLARHSLGLQTLGLTARRCTREFGLLLLFLCVAIALFSPLLYLIENEAAATREFS 413

  Fly   639 SIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFY-KNQMRR 702
            |||.|:|||.||||||||||:.|.:..|:|:.....:.|:|::|.|:..|.:.|:..| :.:..:
Zfish   414 SIPATYWWAVITMTTVGYGDMVPRSIPGQVVALSSILSGILLMAFPVTSIFHTFSRSYVELKQEQ 478

  Fly   703 EKALKRR 709
            ::.|:||
Zfish   479 QRLLQRR 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 54/106 (51%)
BTB_2 309..408 CDD:280393 52/98 (53%)
Ion_trans 501..700 CDD:278921 84/206 (41%)
Ion_trans_2 613..696 CDD:285168 35/83 (42%)
kcng1NP_001103880.1 BTB 72..179 CDD:197585 54/106 (51%)
BTB_2 72..171 CDD:280393 52/98 (53%)
Ion_trans 260..475 CDD:278921 85/214 (40%)
Ion_trans_2 387..469 CDD:285168 35/81 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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