DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcnq1.2

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_017209602.2 Gene:kcnq1.2 / 796289 ZFINID:ZDB-GENE-130530-935 Length:597 Species:Danio rerio


Alignment Length:581 Identity:128/581 - (22%)
Similarity:210/581 - (36%) Gaps:179/581 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   414 HQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKY---------LWELLEKPN------TSFA 463
            |.::...|.: |::..|:.....|.........:..|         ::..||:|.      ..|.
Zfish    75 HTKEPPAHSQ-RRQPVSIHSGPGETLAAAARFTHSPYHAKTSMQGDVYNFLERPAGLRCFLYHFL 138

  Fly   464 ARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR-FSAS- 526
            ..::.::.::|.|||||.         |:.|..|    ..|..:|.|.:.:|..||::| :||. 
Zfish   139 VFLMVLVCLIFSVLSTIE---------QYADFAT----GSLFWMEIVLVVFFGTEYVVRLWSAGC 190

  Fly   527 -------PDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKN----ATDQFQDVRRVVQVFRIMRI 580
                   ..:.:|.:..::||||:.::   .|:.:|....|    ||...:.:       |.::|
Zfish   191 RSKYVGIKGRLRFIRKPISIIDLIVVV---ASVVVLSVGSNGQVFATSAIRGI-------RFLQI 245

  Fly   581 LRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS-LAYFAEKDEKD----TKFVSI 640
            ||:|.:.|.....:.||..:....:|| :..|::....||||| ..|.||||..|    |.|.|.
Zfish   246 LRMLHVDRQGGTWRLLGSVVFIHRQEL-ITTLYIGFLGLIFSSYFVYLAEKDAVDEEGKTGFSSY 309

  Fly   641 PETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALP--------------------- 684
            .:..||..:|:||:||||..|.|.:||.|.:...:..:...|||                     
Zfish   310 ADALWWGVVTVTTIGYGDKVPQTWIGKAIASCFSVFAISFFALPAGILGSGFALKVQQKQRQKHF 374

  Fly   685 ---------------------------------------IPII------VNNFAEFYKNQMRREK 704
                                                   ||||      ..||....|...|:.|
Zfish   375 NRQIPAAASLIQTLWRCYACEKSDSCTATWKMYVLTGDYIPIINSENSSPGNFRRLSKRYKRKPK 439

  Fly   705 ALKRREALDRA-KREGSI--VSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPNIG 766
            :|:...:|..| :|..||  :::.||..|||           |.|...|.:.  |..|.|    .
Zfish   440 SLRDNGSLGPAGERALSIPQITYDHIEDKDA-----------VFTDDSTGIA--KLFRSS----D 487

  Fly   767 RQ------TLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLHNRRG 825
            ||      ||...|:|                            ..|..|.....||::|.:...
Zfish   488 RQRSWSAFTLSCPSSP----------------------------VKKKLDGPDISRNNSLVDELD 524

  Fly   826 SSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLQQQQQQQQQMLQMQQIQQKAPNGN 886
            .::| |...|...|..........|::..||.|..:.:::.||.::...::.:.::...|:
Zfish   525 FTTE-DIPLPVVTDASQLSHAHRSAIKVIRRMQYFVARRKFQQARKPYDVRDVIEQYSQGH 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 1/1 (100%)
BTB_2 309..408 CDD:280393
Ion_trans 501..700 CDD:278921 68/282 (24%)
Ion_trans_2 613..696 CDD:285168 37/153 (24%)
kcnq1.2XP_017209602.2 Ion_trans 133..369 CDD:306908 71/259 (27%)
KCNQ_channel 487..>597 CDD:308886 22/127 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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