DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and si:ch73-334d15.4

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_001336524.4 Gene:si:ch73-334d15.4 / 796217 ZFINID:ZDB-GENE-091204-184 Length:430 Species:Danio rerio


Alignment Length:450 Identity:158/450 - (35%)
Similarity:234/450 - (52%) Gaps:69/450 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 SKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPK 366
            |:..:.::.:|||||:||.|..||..||.:||..|  ..|.:           :.:|.||||||:
Zfish    12 SEGSSEKIVLNVGGVKHETLRTTLMSLPGSRLAEL--VNTEK-----------SPSELFFDRHPE 63

  Fly   367 SFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVH-------EEM 424
            .|:.:|.:||:||||....:|.|...::..:||:....:|.||...:.|.||.:.       ..|
Zfish    64 VFAHVLQYYRSGKLHCPSNLCGLLLEEEFTFWGISSADVEPCCWETFQQNKETLKALAGIKPSVM 128

  Fly   425 RKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQ 489
            :||.|| .|:.:.....|    :|:.:|.|.:||.:|..||:||:||:.||:||.||.:|.|||.
Zfish   129 KKEEES-GQKQQSSSSRG----WQRKIWALFDKPYSSVCARIIAIISLFFILLSIIAFSLWTLPS 188

  Fly   490 LQH-------IDNGT-------PQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNII 540
            :..       ..|.|       |.:...|..||.||..||..|:.:|..:.|.|..||...:||:
Zfish   189 INSHQFLNAWASNSTDDFSRTRPPEAQALDAVEIVCSIWFVFEFAIRAGSCPSKLWFFINVMNIV 253

  Fly   541 DLLAILPYF-------VSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGF 598
            ||||:.|:|       .|:|.|              ..:...|.:|:||:.||.:|..|::.|..
Zfish   254 DLLALFPWFFRWSSNNFSVFAL--------------GFLHAMRCIRLLRVFKLMQHVFGVRVLTH 304

  Fly   599 TLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIP--ETFWWAGITMTTVGYGDIYP 661
            |||.|...|.::.|.|::..|||.::.||||...||:...|..  :.||||.:|:|||||||:.|
Zfish   305 TLRASLTSLCIVPLLLSICTLIFGTMFYFAELTHKDSYISSSSGLDGFWWALVTLTTVGYGDMLP 369

  Fly   662 TTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSI 721
            .|..||.:..:|.:.|||:|.||:|||||||.:|       ...:|.:.::.|...:.|:
Zfish   370 VTRQGKCVAFLCAMVGVLLIVLPVPIIVNNFLKF-------SSLVKTKHSMPRMNEKRSV 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 38/106 (36%)
BTB_2 309..408 CDD:280393 36/98 (37%)
Ion_trans 501..700 CDD:278921 81/207 (39%)
Ion_trans_2 613..696 CDD:285168 41/84 (49%)
si:ch73-334d15.4XP_001336524.4 BTB 19..107 CDD:197585 37/100 (37%)
BTB_2 19..105 CDD:280393 36/98 (37%)
Ion_trans 217..400 CDD:278921 78/196 (40%)
Ion_trans_2 319..402 CDD:285168 41/82 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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