DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcna6a

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001124098.1 Gene:kcna6a / 795490 ZFINID:ZDB-GENE-080722-21 Length:475 Species:Danio rerio


Alignment Length:487 Identity:175/487 - (35%)
Similarity:265/487 - (54%) Gaps:87/487 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 VSINVGGVRHEVLWRTLERLPHTRLG----RLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFS 369
            |:||:.|:|.|...:||.|.|:|.||    |:|             .:....||:||||:..||.
Zfish    33 VTINISGLRFETQLKTLARYPNTLLGDPIKRMR-------------FFDPLRNEFFFDRNRPSFD 84

  Fly   370 SILNFYRT-GKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQ 433
            :||.:|:: |:|.....:.|..|.|:::::.:.:..:      |:.|           |.|.|.:
Zfish    85 AILYYYQSGGRLRRPINVPVDMFLDEIKFYEIGDDVI------KHFQ-----------EDEGLLK 132

  Fly   434 RDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQH----ID 494
            .||......   |:::.:|.|.|.|::|.|||:||::|::.|::|.|...:.|||:.:.    .|
Zfish   133 EDERPLPSN---EFKRQIWLLFEHPDSSGAARIIAIVSVMVILISIIIFCIETLPEFREDDRVFD 194

  Fly   495 NGTPQDN-----------PQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPY 548
            |..|.::           ....::|.:||.||..|..:||.|.|.|..|||..:|.||::||:||
Zfish   195 NHLPANSTTSVQRLSAYTDPFFLLETICIVWFCFELFIRFLACPSKPTFFKDIMNTIDIVAIMPY 259

  Fly   549 FVSLFL----LETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGL 609
            |::|.|    :::|:..|...    .:::|.|::|:.||.||:|||.|||.||.|||.|.:||||
Zfish   260 FITLSLELGEVQSNQQQTTSL----AILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGL 320

  Fly   610 LMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCC 674
            |:.||.:|:::|||..||||.|:.:|.|.|||:.||||.::||||||||:||.|..||::|::|.
Zfish   321 LIFFLIIGIILFSSAVYFAEADDPETSFTSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSMCA 385

  Fly   675 ICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREA---------LDRAKRE--GSIVSFHHIN 728
            |.|||.||||:|:||:||..||..:......::....         .||.|.:  .|::...|.|
Zfish   386 IAGVLTIALPVPVIVSNFNYFYHREHNEADQVEYTHVTCGRSLPMQCDRNKSDSKSSLMISEHSN 450

  Fly   729 LKDA--------FAKSMDLIDVIVDTGKQTNV 752
             .||        |..|.|.      |||.|:|
Zfish   451 -DDACTISSILNFGPSEDY------TGKLTDV 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 32/111 (29%)
BTB_2 309..408 CDD:280393 31/103 (30%)
Ion_trans 501..700 CDD:278921 100/213 (47%)
Ion_trans_2 613..696 CDD:285168 48/82 (59%)
kcna6aNP_001124098.1 BTB 33..122 CDD:197585 31/107 (29%)
BTB_2 33..121 CDD:280393 31/100 (31%)
Ion_trans 211..411 CDD:278921 100/203 (49%)
Ion_trans_2 <350..401 CDD:285168 32/50 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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