DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and Kcnk16

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001102990.1 Gene:Kcnk16 / 688996 RGDID:1582911 Length:292 Species:Rattus norvegicus


Alignment Length:219 Identity:51/219 - (23%)
Similarity:79/219 - (36%) Gaps:79/219 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   487 LPQLQHIDNGTPQDNPQL-AMVEAVCITWFTLEYILRFSASPDKW----KFFKGGLNIIDL---- 542
            |.:|:.::|.|..|...| ..|:.:...|.........|.:|..|    .||..|..:..:    
  Rat    49 LEKLRFLENYTCLDQQALEQFVQVILEAWVKGVNPKGNSTNPSNWDFGSSFFFAGTVVTTIGYGN 113

  Fly   543 ----------------LAILPYFVSLFL------LETNKNATDQFQDVRRVVQVFRIMRILRILK 585
                            |..:|..| :||      |..:....|:::|                  
  Rat   114 LAPSTEAGQVFCVFYALMGIPLNV-VFLNHLGTGLRAHLTTLDRWED------------------ 159

  Fly   586 LARHSTGLQSLGFTLRNSYKELGLLMLFLAMG---VLIFSSLAYFAEKDEKDTKFVSIPETFWWA 647
            ..|||..||.||            |.|||.:|   :|||..: :|:.     .:..|..|.|::|
  Rat   160 HPRHSQLLQVLG------------LALFLTLGTLVILIFPPM-FFSH-----VEGWSFREGFYFA 206

  Fly   648 GITMTTVGYGDIYPTTALGKVIGT 671
            .||::|:|:||.        |:||
  Rat   207 FITLSTIGFGDY--------VVGT 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720
Ion_trans 464..700 CDD:459842 51/219 (23%)
Kcnk16NP_001102990.1 Ion_trans_2 87..145 CDD:462301 11/58 (19%)
Ion_trans_2 180..248 CDD:462301 17/57 (30%)
Blue background indicates that the domain is not in the aligned region.

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