DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and Shawl

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:1123 Identity:284/1123 - (25%)
Similarity:407/1123 - (36%) Gaps:395/1123 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 SRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSI 371
            :|:.:||.|:|:|....||:::|.|||.||.|...         :|....|||||||||..|:.|
  Fly     5 NRIILNVSGIRYETYKATLKKIPATRLSRLTEALA---------NYDPVLNEYFFDRHPGVFTQI 60

  Fly   372 LNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKY--HQRKEN---------VHEEMR 425
            ||:|||||||...::|...|.::||:||:|...:|.||...|  |:..:|         :..|..
  Fly    61 LNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKP 125

  Fly   426 KEAESLRQRDEEEF---GEGKCAEYQK-YLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNT 486
            .|.:..|....||.   ||..|.:..| .:|.:.::|::|..|:::|.:|:.||.:|.|:..|.|
  Fly   126 TEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKT 190

  Fly   487 -------LPQLQHIDNG------------------------------------------------ 496
                   ||...|..:|                                                
  Fly   191 HPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSS 255

  Fly   497 ---------TP---------------------------------------------QDNPQLAMV 507
                     ||                                             |.:.....|
  Fly   256 GNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYV 320

  Fly   508 EAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQ---DVR 569
            |.||..||.:|.|:|...||:.|:|.|..:||||..|.|.::            ||..|   :..
  Fly   321 ELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY------------TDVMQRMGEYT 373

  Fly   570 RVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEK--DE 632
            .:::.|.|:||:|:.||.|||.||:.|..|.:.|.|||.||:.||.:|::.|:||||:|||  |.
  Fly   374 GLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDN 438

  Fly   633 KDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYK 697
            .|.:|.|||...|||.:|||||||||:.|.|..|..:|.:|.:.|||.||||:|:||:||:.||.
  Fly   439 PDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYS 503

  Fly   698 NQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQST 762
            :...|.|..|:|.                                     :...|..|:.||:.|
  Fly   504 HTQARSKLPKKRR-------------------------------------RVLPVEQPRRKREPT 531

  Fly   763 -PNIGRQTLDVQSAP----------------GHNLSQTDGNSTEGESTSGR-------NPATTGT 803
             |:.||.....|:.|                |..|    |....|.|.:|.       ..|..||
  Fly   532 APHRGRTNAIKQTPPTGPGLVAGGVVPVGAGGPGL----GGHAVGHSAAGAPMFKDAFGGAKIGT 592

  Fly   804 GCYKNYDHVANLRNSN---LHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLQQQ 865
                     .|:...|   ||                   |..|.|:.|||        |:.:..
  Fly   593 ---------VNVNGVNVIGLH-------------------PAQRTTTTMAM--------AMNEAD 621

  Fly   866 QQQQQQMLQMQQIQQKAP-------NGNGGATGGGVAN----NLAMVAASSAATAVATATNASNA 919
            ......:.....:.|..|       :.:|.|.|.|.|:    :.|.:..|:|:.|||||..|:.|
  Fly   622 PTPMSALTYQVPMLQPTPTPAHSHGHAHGHAHGLGPASAAMTSSASLTGSAASAAVATAAAAAPA 686

  Fly   920 SNTAPGSEGAEGGGDGDGGGVDDDNLS-----------QAKGLPIQMMITPGEVAELRR------ 967
            ..:.                :..|.||           ...|....:.:.|..:..|.|      
  Fly   687 GPSF----------------ISSDYLSVPAVQSLQPRAATTGHDFMLPLQPKLLGPLERKDQHPL 735

  Fly   968 QVALENLQNQRMDNLEQDVPVEFECCFCTTKDFKEFTDAEGVISLPTSDFHKPICLEMRLAAAGR 1032
            |:...||                                       .||.|:  .:....|.:..
  Fly   736 QLTAHNL---------------------------------------ASDTHQ--LMYSGHAHSQH 759

  Fly  1033 QAGAYGLLSPLPAPLPPLHGPLLALPPPPPL-------PPTSCAAVLLPAISQSSSTSS------ 1084
            :.|....:..:|..|...|..:     ||.:       |..|    ..||...||..::      
  Fly   760 KVGGGAAVLNVPPTLSMSHTQM-----PPGIASMGQRTPNLS----FRPAHGASSQVATVQQPIP 815

  Fly  1085 -SYGTTTSTTIALPLDVSLRYGATICSSSNFNHNYNNNFNTTTVGGGGNGTLL--FGGNYNGSNN 1146
             |:....||...:.:.|         :|:..:....:.|.|..|      |||  ...:.|.|.:
  Fly   816 HSHACHASTNCNIKISV---------ASAGLSVGCPDEFRTPKV------TLLDDLSDDVNSSTD 865

  Fly  1147 NNADLASVDSSDTYASCQTHPFLSQGDLTADFNDEACALDIDMDNLYINPLEREQHQGISSSTGF 1211
            :..|...||.||||....    ::.|....:...||..||   |.|..|..|.|:     ...|.
  Fly   866 DCGDCCLVDDSDTYEGTT----INNGPSGQENGTEAIGLD---DGLLDNDGEDEE-----DGEGS 918

  Fly  1212 IVGLPSTNSSG----GPR 1225
            .||..|.:|.|    |||
  Fly   919 GVGGDSGDSLGGIYIGPR 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 47/108 (44%)
BTB_2 309..408 CDD:280393 43/98 (44%)
Ion_trans 501..700 CDD:278921 91/203 (45%)
Ion_trans_2 613..696 CDD:285168 46/84 (55%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 44/100 (44%)
BTB_2 7..97 CDD:280393 43/98 (44%)
Ion_trans 307..506 CDD:278921 92/210 (44%)
Ion_trans_2 <449..499 CDD:285168 28/49 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
54.920

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