DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcng4b

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_009301775.1 Gene:kcng4b / 566228 ZFINID:ZDB-GENE-130530-634 Length:535 Species:Danio rerio


Alignment Length:448 Identity:164/448 - (36%)
Similarity:269/448 - (60%) Gaps:31/448 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 INVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFY 375
            |||||.|:...|.||:..|.:|||:||.|::.:.|.:|||||..|..|:||||...:|..||||.
Zfish    64 INVGGDRYTFPWSTLDEFPLSRLGQLRHCSSPDDIAQLCDDYDEARREFFFDRSSVAFRVILNFL 128

  Fly   376 RTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRD--EEE 438
            ..|||.::.::|.::.||:|.|||:|.:::|.||:.|...|.|:|.|:.:||.|..::|.  :..
Zfish   129 AAGKLRLLRQVCAVSLSDELTYWGIDPVHMERCCRRKLLSRVEDVAEKKKKEDERKQKRHALQRP 193

  Fly   439 FGEGK-CAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDN- 501
            ..:.| .......|.|::|.|::.:|.::.|..|::.|.::.|:|.::|||  .|.:.|...:. 
Zfish   194 LAQDKGFIRLMNRLQEIVENPHSGWAGKLFACFSVVMIAVTVISLCISTLP--DHENRGECTEKC 256

  Fly   502 PQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFL--------LETN 558
            ..:.:||.||:.||::|::|||..:..|.:|.:..||:||::|||||::||.:        .|.|
Zfish   257 RNIFIVETVCVAWFSMEFLLRFLQAESKMQFLRNPLNVIDVIAILPYYISLVVDSEDTSDEAELN 321

  Fly   559 KNATDQ--FQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIF 621
            ...|.:  ...:..:::|.|.:|||.:::|||||.|||:||.|::.|.:|.|||:|||.:.|.:|
Zfish   322 GAGTSRGYLDKLGLILRVMRALRILYVMRLARHSLGLQTLGLTMQRSMREFGLLLLFLCVAVALF 386

  Fly   622 SSLAYFAEKDEKDTK------FVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLV 680
            |.|.:.|||:....|      |.|||.::|||.|:||||||||:.|.:..|:|:.....:.|:|:
Zfish   387 SPLVHLAEKEFSKGKATGPNSFSSIPASYWWAIISMTTVGYGDMVPYSIPGQVVAFSSILSGILI 451

  Fly   681 IALPIPIIVNNFAEFYKNQMRREKAL----KRREALDRAKREGSIVSFHHINLKDAFA 734
            :|.|...|.:.|:..| ::::||:.:    :|...||...:|.:    ..:..:|:|:
Zfish   452 MAFPATSIFHVFSRSY-HELKREQEMIYKEERVAILDATAKEDA----QRLLKRDSFS 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 48/104 (46%)
BTB_2 309..408 CDD:280393 45/96 (47%)
Ion_trans 501..700 CDD:278921 84/215 (39%)
Ion_trans_2 613..696 CDD:285168 35/88 (40%)
kcng4bXP_009301775.1 BTB_2 64..161 CDD:280393 45/96 (47%)
BTB <102..163 CDD:197585 28/60 (47%)
Ion_trans 259..471 CDD:278921 84/212 (40%)
Ion_trans_2 <414..465 CDD:285168 21/50 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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