DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and kcnc1a

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_005168950.1 Gene:kcnc1a / 565419 ZFINID:ZDB-GENE-061220-10 Length:609 Species:Danio rerio


Alignment Length:607 Identity:210/607 - (34%)
Similarity:302/607 - (49%) Gaps:99/607 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 RVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL 372
            ||.|||||:||:....||..||.|||..|.|...|...     ||....:|:||||||..|:.||
Zfish     9 RVVINVGGIRHQTYRSTLRTLPGTRLAWLAEPDAHSHF-----DYDAQIDEFFFDRHPGVFAHIL 68

  Fly   373 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENV--------------HEE 423
            |:|||||||...::|...:.::|.:||:||..:|.||...|.|.:|..              :::
Zfish    69 NYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHREAEEALDSFGGGPVEMGNDD 133

  Fly   424 MRKEAESLRQRDEEEF---------------GEGKCAEYQKYLWELLEKPNTSFAARVIAVISIL 473
            |..||.......:||.               |.|....:|:.:|.|.|.|.:|..||.:|..|:.
Zfish   134 MDTEALGDPGDGDEELEMTKRLAVGDSPDTKGAGFWQRWQRRVWALFEDPYSSKYARWVAFASLF 198

  Fly   474 FIVLSTIALTLNTLPQLQHIDNGT---PQDNPQ-----------LAMVEAVCITWFTLEYILRFS 524
            ||::|.....|.|......|.|.|   .|||..           |..:|.||:.|||.|:::|.:
Zfish   199 FILVSITTFCLETHEAFNPIINRTYVNTQDNTSRFHLETETVVYLTYIEGVCVVWFTFEFLMRVT 263

  Fly   525 ASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARH 589
            ..|||.||.|..|||||.:||||:::.:.|   :..::.:.:||...::|.|.:|||||.||.||
Zfish   264 FCPDKKKFIKNTLNIIDFVAILPFYLEVGL---SGLSSSEAKDVLGFLRVVRFVRILRIFKLTRH 325

  Fly   590 STGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAE---------KDEKDTKFVSIPETFW 645
            ..||:.||.|||.|..|..||::|||:|||||:::.|:||         :..:.|.|.:||..||
Zfish   326 FVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGANPNDPRASEHTHFKNIPIGFW 390

  Fly   646 WAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRR- 709
            ||.:||||:||||:||.|..|.::|.:|.:.|||.||:|:|:|||||..:|...|.::|..|:: 
Zfish   391 WAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKN 455

  Fly   710 EALDRAKREGS-------IVSFHH---INLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPN 764
            :.:.||.:.||       :.|.||   |:...|.|...:::::        |...||...::   
Zfish   456 KHIPRAPQLGSANYCKSAMNSPHHSPQISEHCALAAQEEILEM--------NRADPKVNGEA--- 509

  Fly   765 IGRQTLDVQSAP--GHNLSQTDG-----NSTEGES-----TSGRNPATTGTGCYKNYDHVANLRN 817
             .:..|..:..|  ...:|..||     |...|::     ..||....|||...|.|....:|..
Zfish   510 -AKAALANEDCPHIDQAISPEDGQIFNPNEPRGDTPCFLLNVGRRSTNTGTRVRKGYQKSRSLGT 573

  Fly   818 SNLHNRR----GSSSEQDAVPP 835
            .:...|.    .|.|....:||
Zfish   574 ISSKARTLAEVVSMSTGSCIPP 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 48/106 (45%)
BTB_2 309..408 CDD:280393 45/98 (46%)
Ion_trans 501..700 CDD:278921 96/218 (44%)
Ion_trans_2 613..696 CDD:285168 45/91 (49%)
kcnc1aXP_005168950.1 BTB 10..112 CDD:197585 48/106 (45%)
BTB_2 10..104 CDD:280393 45/98 (46%)
Ion_trans 243..445 CDD:278921 95/204 (47%)
Ion_trans_2 <388..435 CDD:285168 26/46 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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