DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and kcnq1.1

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_073762763.1 Gene:kcnq1.1 / 557498 ZFINID:ZDB-GENE-061214-5 Length:669 Species:Danio rerio


Alignment Length:463 Identity:113/463 - (24%)
Similarity:197/463 - (42%) Gaps:95/463 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 QKYLWELLEKPNTSFAARVIAVISILFIVLSTIALT-LNTLPQLQHIDNGTPQDNPQLAMVEAVC 511
            |..::..||:| |.:...|.. .::..||||.:.|: |:|:.:.|.:.|.|      |..:|.|.
Zfish    89 QGRVYNFLERP-TGWKCFVYH-FTVFLIVLSCLILSVLSTIDEYQALANKT------LFWMELVL 145

  Fly   512 ITWFTLEYILRFSASP---------DKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQD 567
            :.:|.:||::|..::.         .:.:|.:..:::|||:.::   .|:.:|....|.      
Zfish   146 VMFFGVEYVVRLWSAGCRSKYVGILGRLRFARKPISVIDLIVVV---ASIIVLAFGSNG------ 201

  Fly   568 VRRVVQVF--------RIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS- 623
                 |||        |.::|||:|.:.|.....:.||..:....:|| :..|::....||||| 
Zfish   202 -----QVFATSAVRGVRFLQILRMLHVDRQGGTWRLLGSVVFIHRQEL-ITTLYIGFLGLIFSSY 260

  Fly   624 LAYFAEKDEKD----TKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALP 684
            ..|.||||..|    :.|.|..:..||..:|:||:||||..|.|.:||.|.:...:..:...|||
Zfish   261 FVYLAEKDAVDDHGNSGFGSYADALWWGVVTVTTIGYGDKVPQTWIGKTIASCFSVFAISFFALP 325

  Fly   685 IPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQ 749
            ..|:.:.|| ....|.:|:|...|:.....:..:.|...|..:|...|..|      :.|.....
Zfish   326 AGILGSGFA-LKVQQKQRQKHFNRQIPAAASLIQASWRCFALLNPDSATYK------LFVKRNLS 383

  Fly   750 TNVVHPKGK--------------RQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSG--RNP 798
            ::...||.|              .|::|.:...|.|         |..||..:..|:.:.  ::.
Zfish   384 SSGSSPKLKVKMRRKMKISDRNNGQNSPAVPSITYD---------SFDDGRDSRQETLTSLQQSV 439

  Fly   799 ATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYS----FD---NPNARQTSMMA--MESY 854
            .:.||...:.|:...:..:        .||.|.:.||.:    |:   .|..:::|.:|  ||:.
Zfish   440 ISDGTNTTRRYERAPSWNS--------LSSFQFSTPPATKPGVFEVSSRPTLQRSSSIADDMETE 496

  Fly   855 RREQQALL 862
            ...:..|:
Zfish   497 PEREIVLI 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720
Ion_trans 464..700 CDD:459842 72/258 (28%)
kcnq1.1XP_073762763.1 None
Blue background indicates that the domain is not in the aligned region.

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