DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and Kcng4

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001100905.1 Gene:Kcng4 / 307900 RGDID:1308553 Length:506 Species:Rattus norvegicus


Alignment Length:486 Identity:174/486 - (35%)
Similarity:275/486 - (56%) Gaps:45/486 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 GASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW 322
            |...||:.|             |....:|.:|::.       |..:|....:.:||||.|:.:.|
  Rat    29 GPEPQSVKG-------------LYYRRARKVSTLD-------ASPEANLKEILVNVGGQRYLLPW 73

  Fly   323 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMC 387
            .||:..|.:||.|||.|.::|.|.:|||||.....|:||||:|.:|..|::|...|||.::.|||
  Rat    74 STLDAFPLSRLSRLRLCRSYEEITQLCDDYDENSQEFFFDRNPSAFGVIVSFLAAGKLVLLREMC 138

  Fly   388 VLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEA---ESLRQRDEEEFGEGKCAEYQK 449
            .|:|.::|.|||::|..||.||..|..::.|...|..|:||   :..||....|....:.|....
  Rat   139 ALSFREELSYWGIEEANLERCCLRKLLKKLEEAAELRREEAAQRQQQRQACHSEVQASRWARSMN 203

  Fly   450 YLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLA-------MV 507
            .|.|::|.|.:....:|.|.:|:||:..:.::|.::|:|     |....:|..:.|       :|
  Rat   204 QLREMVEDPQSGLPGKVFACLSVLFVATTAVSLCVSTMP-----DFRAEEDKGECARKCYYIFVV 263

  Fly   508 EAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQ------FQ 566
            |.:|:.||:||:.|||..:|:|.:||:|.||:||:|||.||:|||.:.:.:..|.::      .:
  Rat   264 ETICVAWFSLEFCLRFVQAPNKCQFFRGPLNVIDILAISPYYVSLAVSDESPEAGERPSGSSYLE 328

  Fly   567 DVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKD 631
            .|..|::|.|.:|||.:::|||||.|||:||.|:|...:|.|||:|||.:.|.:||.|.|.||.:
  Rat   329 KVGLVLRVLRALRILYVMRLARHSLGLQTLGLTVRRCAREFGLLLLFLGVAVTLFSPLVYVAENE 393

  Fly   632 E-KDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEF 695
            . :..:|.|||.::|||.|:||||||||:.|.:..|:::.....:.|:|::|.|...|.:.|:..
  Rat   394 SGRVLEFTSIPASYWWAIISMTTVGYGDMVPRSVPGQMVALSSILSGILIMAFPATSIFHTFSHS 458

  Fly   696 Y---KNQMRREKALKRREALDRAKREGSIVS 723
            |   |.:..:.:|..||...:.:..|..::|
  Rat   459 YLELKREQEQVQARLRRLQNNNSASERELLS 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 49/106 (46%)
BTB_2 309..408 CDD:280393 46/98 (47%)
Ion_trans 501..700 CDD:278921 88/215 (41%)
Ion_trans_2 613..696 CDD:285168 33/83 (40%)
Kcng4NP_001100905.1 BTB 60..167 CDD:197585 49/106 (46%)
BTB_2 60..159 CDD:280393 46/98 (47%)
Ion_trans 260..463 CDD:278921 86/202 (43%)
Ion_trans_2 397..457 CDD:285168 24/59 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

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