DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and Kcnc2

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001346681.1 Gene:Kcnc2 / 268345 MGIID:96668 Length:642 Species:Mus musculus


Alignment Length:650 Identity:208/650 - (32%)
Similarity:307/650 - (47%) Gaps:128/650 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 NSRVSINVGGVRHEVLWRTLERLPHTRLGRLR------ECTT----------------------- 341
            |.||.:||||.|||....||:.||.|||..|.      :|.|                       
Mouse     7 NERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPPPRPPPLS 71

  Fly   342 ------HEAIVELC-----------DDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVL 389
                  .|.....|           .|:.....|:||||||..|:.:||:|||||||...::|..
Mouse    72 PVPSGCFEGGAGNCSSHGGNGGNGGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCGP 136

  Fly   390 AFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQR---------DEEEFG----- 440
            .|.::|.:||:||..:|.||...|.|.::      .:||..:.:.         |:|:..     
Mouse   137 LFEEELAFWGIDETDVEPCCWMTYRQHRD------AEEALDIFETPDLIGGDPGDDEDLAAKRLG 195

  Fly   441 ----------EGKCAEYQKY---LWELLEKPNTSFAARVIAVISILFIVLSTIALTLNT------ 486
                      :||...::|.   :|.|.|.|.:|.|||.||..|:.||::|.....|.|      
Mouse   196 IEDAAGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNI 260

  Fly   487 -LPQLQHIDNGTP-------QDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLL 543
             ..:.:.:.|||.       :.:|.|..||.||:.|||.|:::|...||:|.:|.|..|||||.:
Mouse   261 VKNKTEPVINGTSPVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFV 325

  Fly   544 AILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELG 608
            ||||:::.:.|...:..|.   :||...::|.|.:|||||.||.||..||:.||.|||.|..|..
Mouse   326 AILPFYLEVGLSGLSSKAA---KDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFL 387

  Fly   609 LLMLFLAMGVLIFSSLAYFAEK---------DEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTA 664
            ||::|||:|||||:::.|:||:         ..:.|:|.:||..||||.:||||:||||:||.|.
Mouse   388 LLIIFLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTW 452

  Fly   665 LGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINL 729
            .|.::|.:|.:.|||.||:|:|:|||||..:|...|.::|..::|:.........|..:|....|
Mouse   453 SGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTEL 517

  Fly   730 KDAFAKSMDLIDVIVDT--GKQTNVV-HPKGKRQSTPNIGRQTLDVQSAPGHNL----SQTDGNS 787
            ..|...:..      ||  ||:..:: |.:.......:.|.:.   ..:|...|    |.|...:
Mouse   518 NMACNSTQS------DTCLGKENRLLEHNRSVLSGDDSTGSEP---PLSPPERLPIRRSSTRDKN 573

  Fly   788 TEGES----TSGRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAV-PPYSFDNPNARQTS 847
            ..||:    |:|.....:..|..|.|:...:|  :|:....|::.....| .||:...|..|..|
Mouse   574 RRGETCFLLTTGDYTCASDGGIRKGYEKSRSL--NNIAGLAGNALRLSPVTSPYNSPCPLRRSRS 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 49/152 (32%)
BTB_2 309..408 CDD:280393 46/144 (32%)
Ion_trans 501..700 CDD:278921 97/207 (47%)
Ion_trans_2 613..696 CDD:285168 45/91 (49%)
Kcnc2NP_001346681.1 BTB_KCNC2_4 7..170 CDD:349722 53/168 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 45..98 4/52 (8%)
Ion_trans 232..488 CDD:395416 110/258 (43%)
Selectivity filter. /evidence=ECO:0000250 441..446 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..576 5/36 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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