DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and Kcnc2

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_631963.1 Gene:Kcnc2 / 246153 RGDID:628829 Length:638 Species:Rattus norvegicus


Alignment Length:646 Identity:209/646 - (32%)
Similarity:308/646 - (47%) Gaps:124/646 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 NSRVSINVGGVRHEVLWRTLERLPHTRLGRLR------ECTT----------------------- 341
            |.||.:||||.|||....||:.||.|||..|.      :|.|                       
  Rat     7 NERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPQGDCLTAAGDKLQPLPPPLSPPPRPPPLS 71

  Fly   342 ------HEAIVELC-------DDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSD 393
                  .|.....|       .|:.....|:||||||..|:.:||:|||||||...::|...|.:
  Rat    72 PVPSGCFEGGAGNCSSHGGNGSDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEE 136

  Fly   394 DLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQR---------DEEEFG--------- 440
            :|.:||:||..:|.||...|.|.::      .:||..:.:.         |:|:.|         
  Rat   137 ELAFWGIDETDVEPCCWMTYRQHRD------AEEALDIFETPDLIGGDPGDDEDLGGKRLGIEDA 195

  Fly   441 ------EGKCAEYQKY---LWELLEKPNTSFAARVIAVISILFIVLSTIALTLNT-------LPQ 489
                  :||...::|.   :|.|.|.|.:|.|||.||..|:.||::|.....|.|       ..:
  Rat   196 AGLGGPDGKSGRWRKLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKNK 260

  Fly   490 LQHIDNGTP-------QDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILP 547
            .:.:.|||.       :.:|.|..||.||:.|||.|:::|...||:|.:|.|..|||||.:||||
  Rat   261 TEPVINGTSAVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAILP 325

  Fly   548 YFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLML 612
            :::.:.|...:..|.   :||...::|.|.:|||||.||.||..||:.||.|||.|..|..||::
  Rat   326 FYLEVGLSGLSSKAA---KDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLII 387

  Fly   613 FLAMGVLIFSSLAYFAEK---------DEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKV 668
            |||:|||||:::.|:||:         ..:.|:|.:||..||||.:||||:||||:||.|..|.:
  Rat   388 FLALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGML 452

  Fly   669 IGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAF 733
            :|.:|.:.|||.||:|:|:|||||..:|...|.::|..::|:.........|..:|....|..|.
  Rat   453 VGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKKHIPPAPLASSPTFCKTELNMAC 517

  Fly   734 AKSMDLIDVIVDT--GKQTNVV-HPKGKRQSTPNIGRQTLDVQSAPGHNL----SQTDGNSTEGE 791
            ..:..      ||  ||:..:: |.:.......:.|.:.   ..:|...|    |.|...:..||
  Rat   518 NSTQS------DTCLGKENRLLEHNRSVLSGDDSTGSEP---PLSPPERLPIRRSSTRDKNRRGE 573

  Fly   792 S----TSGRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAV-PPYSFDNPNARQTS 847
            :    |:|.....:..|..|.|:...:|  :|:....|::.....| .||:...|..|..|
  Rat   574 TCFLLTTGDYTCASDGGIRKGYEKSRSL--NNIAGLAGNALRLSPVTSPYNSPCPLRRSRS 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 49/148 (33%)
BTB_2 309..408 CDD:280393 46/140 (33%)
Ion_trans 501..700 CDD:278921 97/207 (47%)
Ion_trans_2 613..696 CDD:285168 45/91 (49%)
Kcnc2NP_631963.1 BTB 10..159 CDD:197585 49/148 (33%)
BTB_2 10..151 CDD:280393 46/140 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 47..75 1/27 (4%)
Ion_trans 277..484 CDD:278921 97/209 (46%)
Ion_trans_2 <427..474 CDD:285168 26/46 (57%)
Selectivity filter. /evidence=ECO:0000250 437..442 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 538..572 5/36 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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