DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and Kcns3

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001162036.1 Gene:Kcns3 / 238076 MGIID:1098804 Length:491 Species:Mus musculus


Alignment Length:464 Identity:196/464 - (42%)
Similarity:297/464 - (64%) Gaps:32/464 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 VSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILN 373
            |::||||.:..|...||.|.||||||:|..|.:.|||:|||||||:||.||:|||:|..|..:||
Mouse    17 VNLNVGGFKQSVDQSTLLRFPHTRLGKLLTCHSEEAILELCDDYSVADKEYYFDRNPFLFRYVLN 81

  Fly   374 FYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE------------EMRK 426
            ||.|||||:::|:||.:|..::||||::||:::|||..:|.:|||..|:            :...
Mouse    82 FYYTGKLHVMEELCVFSFCQEIEYWGINELFIDSCCSSRYQERKEESHDKDWDQKSNDVSTDSSF 146

  Fly   427 EAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQ 491
            |..||.:::.|:|.|.:..:.:|.:|..:|.|....:|::||:.|:..::.|.:|:.::::.:.|
Mouse   147 EESSLFEKELEKFDELRFGQLRKKIWIRMENPAYCLSAKLIAISSLSVVLASIVAMCVHSMSEFQ 211

  Fly   492 HIDNGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLE 556
            :.|...  |:|.|..||..||.|||.|..:|..|:|.:.||:|..|||||.::|:|::.:| .::
Mouse   212 NEDGEV--DDPVLEGVEIACIAWFTGELAIRLVAAPSQKKFWKNPLNIIDFVSIIPFYATL-AVD 273

  Fly   557 TNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIF 621
            |.:..::..:::.:|||:.|:|||.|||||||||.||:|||.|||:||.|:|||:|||::|:.||
Mouse   274 TKEEESEDIENMGKVVQILRLMRIFRILKLARHSVGLRSLGATLRHSYHEVGLLLLFLSVGISIF 338

  Fly   622 SSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIP 686
            |.|.|..||||..:...|||..:|||.|:||||||||.:|.|..||:|.:.|.|||:||:||||.
Mouse   339 SVLIYSVEKDEHKSSLTSIPICWWWATISMTTVGYGDTHPVTLAGKIIASTCIICGILVVALPIT 403

  Fly   687 IIVNNFAEFYKNQMRREKALKRREALDRAKRE--GSIVSFHHINLKD-------AFAKSMDLIDV 742
            ||.|.|:::|:.|...|        :|:...:  .......:.|::|       ||..|:..|.:
Mouse   404 IIFNKFSKYYQKQKDME--------VDQCSEDPPEKCHELPYFNIRDVYAQQVHAFITSLSSIGI 460

  Fly   743 IVDTGKQTN 751
            :|.....|:
Mouse   461 VVSDPDSTD 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 59/106 (56%)
BTB_2 309..408 CDD:280393 55/98 (56%)
Ion_trans 501..700 CDD:278921 103/198 (52%)
Ion_trans_2 613..696 CDD:285168 46/82 (56%)
Kcns3NP_001162036.1 BTB_POZ_KCNS3 15..122 CDD:349735 58/104 (56%)
Ion_trans 184..417 CDD:366146 112/235 (48%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 370..375 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

Return to query results.
Submit another query.