DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and twk-28

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_508732.3 Gene:twk-28 / 183714 WormBaseID:WBGene00006680 Length:523 Species:Caenorhabditis elegans


Alignment Length:245 Identity:53/245 - (21%)
Similarity:94/245 - (38%) Gaps:68/245 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 ILPY---FVSLFL-----------------LET-NKNAT------DQFQDVRRVVQVFRIM---- 578
            |||:   .:.|||                 ||| |...|      |:|||     .::.|.    
 Worm    59 ILPHVGLVILLFLYLIAGAFLFRYLEAPKELETRNHELTTILGLRDEFQD-----HIWNITQDSD 118

  Fly   579 -RILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPE 642
             ||.|....|.:....:.|...:..:|:..             |.:..:...|..:|....:.|.
 Worm   119 NRISREAFNAINQEYFEQLVKNMFQAYRNQ-------------FITAKHLLNKTREDEVLWTFPN 170

  Fly   643 TFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEF----------YK 697
            :.::|...:||:|||::.|.|..|:|...:..:.|:.::.:.|..|....:||          :|
 Worm   171 SMFFAATVITTIGYGNLVPITVTGRVACIIFALLGIPLLLVTIADIGKFLSEFLSYLYRSYRGFK 235

  Fly   698 NQMRRE-KALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDT 746
            .::||: |.:..:.......|..|::.       .:.|.||:|.|:..|:
 Worm   236 RKLRRQSKKITSQYRSQSQSRSSSVMG-------SSKAGSMNLHDIDSDS 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720
Ion_trans 464..700 CDD:459842 42/196 (21%)
twk-28NP_508732.3 Ion_trans_2 <161..222 CDD:462301 15/60 (25%)
Ion_trans_2 292..370 CDD:462301
Blue background indicates that the domain is not in the aligned region.

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