DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and exp-2

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001367760.1 Gene:exp-2 / 179003 WormBaseID:WBGene00001374 Length:510 Species:Caenorhabditis elegans


Alignment Length:515 Identity:179/515 - (34%)
Similarity:277/515 - (53%) Gaps:63/515 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 ASPTHSIPTTSQQIVGSVGGVGVGGASSQSISGGVPTHSQSNTTGALQRTHS------RSMSSIP 292
            ||.::|....:.|:.|::    :.||:.|.....||.......|.|.:|.:.      ||.:|  
 Worm     4 ASISYSALAYNGQVTGNM----ISGAAQQHKKRLVPLRRTDAMTVAERRNYQILDDIFRSGAS-- 62

  Fly   293 PPEPFMIAQSKAVNSR--VSINVGGVRHEVLWRTLERLPHTR-LGRLRECTTHEAIVELCDDYSL 354
              :.|....|....|.  :.:|:||....:|...:.|...|. |.|..: .||.|.:::.|.|..
 Worm    63 --DCFQQVSSADNGSPQFLKLNIGGTSFMILIDAILRADTTTFLSRFVQ-LTHTARLKVADAYIS 124

  Fly   355 ADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKEN 419
            ||:.|:|.|.|.||.::..:|.||.:|...|:|..:|..:|::|.:...::.|||.....|::| 
 Worm   125 ADDAYYFQRSPTSFEAVFQYYATGVVHRPSEICPASFLSELDFWRISHQHVGSCCADIIPQKRE- 188

  Fly   420 VHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTL 484
              ||  ||.|.:   |:..|.:..|.:.::.:|..||:|.:|..|:...:.|.||:.:|.:.|:.
 Worm   189 --EE--KEEEKV---DDTTFDKLMCGKLRRRMWTFLERPGSSMQAKAFELSSTLFVAISVMGLSF 246

  Fly   485 NTLPQLQ-------H-----IDNGTPQ----------DNPQLAMVEAVCITWFTLEYILRFSASP 527
            .|:|..|       |     :.|||..          ::|.....|.:||.:||:||.|||.|:|
 Worm   247 GTIPDFQVTHLMPPHNETVVLPNGTVTVVQKVEQMRVEHPAFVFTERICIAFFTVEYCLRFFAAP 311

  Fly   528 DKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATD-QFQDVR---RVVQVFRIMRILRILKLAR 588
            .|.:|....||::|||||:|:::.|.|  |.....| :.:|:|   .||::.|::|::||:||.|
 Worm   312 RKLRFALKPLNLVDLLAIVPFYLELLL--TLCGVDDRKLRDLRWAFLVVRILRVLRVIRIIKLGR 374

  Fly   589 HSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTT 653
            .|:|||:.|.||:.|.|:|.::.:.|..||:.||::.||.||||:.|.|.|||..:||..:||||
 Worm   375 FSSGLQTFGMTLQRSQKQLQMMTIVLLTGVVFFSTMIYFLEKDEEGTPFTSIPAAYWWCIVTMTT 439

  Fly   654 VGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNF---------AEFYKNQMRREK 704
            |||||..|.|.:||:|.:...:|||||:||||.|||:||         ||..||..:.|:
 Worm   440 VGYGDAVPATTMGKIIASAAIMCGVLVLALPITIIVDNFIKVAQDEQQAEQQKNDQQSEQ 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 33/107 (31%)
BTB_2 309..408 CDD:280393 30/99 (30%)
Ion_trans 501..700 CDD:278921 98/211 (46%)
Ion_trans_2 613..696 CDD:285168 48/91 (53%)
exp-2NP_001367760.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 207 1.000 Domainoid score I1679
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4489
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101602
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3999
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.900

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