DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kvs-5

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001294321.1 Gene:kvs-5 / 176899 WormBaseID:WBGene00021948 Length:600 Species:Caenorhabditis elegans


Alignment Length:602 Identity:173/602 - (28%)
Similarity:281/602 - (46%) Gaps:113/602 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 TGTGAGSGSGSGAAGKEVRYAPF--------------------PVASPT----------HSIPTT 243
            :.||.......|:.|...|..||                    |::|..          .|.|::
 Worm     3 SSTGRSFTPLDGSNGTSSRRNPFVQVTSTDSCHLPDRPVLNTPPISSRVRGEKLVNYMERSPPSS 67

  Fly   244 SQQIVGSVGGVGVGGASSQSISGGVPTHSQSNTTGALQRTHSRS--------MSSIPPPEPFMIA 300
            |..|:  .|.:..|..|..:........:|.:......|:.:::        |..:..|......
 Worm    68 SVAII--PGQIASGSTSMAACERENSVDNQPDRASIDDRSSNKNYDEDVESRMIPVDRPSHKGSI 130

  Fly   301 QSKAVNSRVSINVGGVRHEVLWRTLERL-PHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRH 364
            :....:|.:.:|:||..:.:..|::.:. |.|.|||... ..||...:..|.|....:||||:|.
 Worm   131 RDNTPDSILRLNIGGSSYRIRTRSIIKFGPKTLLGRFVR-MNHEHRRQWADWYFEEQDEYFFERV 194

  Fly   365 PKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMR--KE 427
            |:.|..|.:||.|||||:..::|...|..:|.:|.|.:..::.||. .:.|....:..:.:  .|
 Worm   195 PRYFDPIYDFYATGKLHVPKDLCFDKFMAELRFWAVSKSRMDECCS-PFTQYCVTMGGDPKCTDE 258

  Fly   428 AESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQ- 491
            |..| |::::.|...:||..::.||.:||..:.|...:...:||..|:|||..||.|.::|:.| 
 Worm   259 AAEL-QKEKDHFIGVRCANIRRRLWLILEGHSQSKWWKAFEIISTAFVVLSISALILGSIPEFQV 322

  Fly   492 -----------------------------------HIDNG-----------TPQ--------DNP 502
                                               ..||.           ||:        ::|
 Worm   323 PQKSEDGQLVYATATYPTYPNGGGMTIESRTVVREGSDNSTGDLMAEETVPTPRNTGKIEMTEHP 387

  Fly   503 QLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQD 567
            ....||.||:.:|::||.:||..:|.|..|.:..||:||||:|.|::..|.|.....:.    ::
 Worm   388 VFTWVENVCVIYFSIEYAMRFIVAPRKLAFARQILNVIDLLSIAPFYFELLLWICGISG----EN 448

  Fly   568 VRRV------VQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAY 626
            ||:|      |::.|::|::||.||.|.|.||.:...|:|.|.|::.::.:.:...::.||:|.|
 Worm   449 VRKVRWAFLTVRLLRVLRVIRIAKLGRFSPGLANFALTIRKSKKQMQMVGVVMMTVIIFFSTLIY 513

  Fly   627 FAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNN 691
            |.|:||..|||.|||.||||..:||.||||||:.|.|..||::|:...:|||:|:||||.|:|||
 Worm   514 FLERDEPGTKFTSIPATFWWCVVTMATVGYGDLVPVTVAGKLVGSGAIVCGVMVLALPITIMVNN 578

  Fly   692 FAEFYKNQMRREKALKR 708
            |.:..|  :|.|:.:|:
 Worm   579 FMQVVK--LREEEIVKK 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 35/107 (33%)
BTB_2 309..408 CDD:280393 33/99 (33%)
Ion_trans 501..700 CDD:278921 86/204 (42%)
Ion_trans_2 613..696 CDD:285168 44/82 (54%)
kvs-5NP_001294321.1 BTB_POZ_Kv 139..228 CDD:349626 31/89 (35%)
Ion_trans 377..587 CDD:366146 86/215 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 207 1.000 Domainoid score I1679
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101602
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

Return to query results.
Submit another query.