DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and shw-1

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_001022089.1 Gene:shw-1 / 174331 WormBaseID:WBGene00008819 Length:619 Species:Caenorhabditis elegans


Alignment Length:644 Identity:197/644 - (30%)
Similarity:308/644 - (47%) Gaps:119/644 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 AGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGVGVGGASSQSISGGVPT------HSQSNTTGAL 280
            |.|||...|....|.:|                    .|.|..:..||:      |....:..:.
 Worm    18 ASKEVVDTPIQTISSSH--------------------VSFQITTDPVPSMDYLSIHEDDTSMSSS 62

  Fly   281 QRTHSRSMSSIPPPEPFMIAQSKAVN------------SRVSINVGGVRHEVLWRTLERLPHTRL 333
            :||..|..|........:......||            .||.:||||:|||.....|:::|.|||
 Worm    63 ERTIERGFSRYGRKRSSVRMLLDEVNMTDRKTSWMDTEHRVILNVGGIRHETYSHVLKKIPATRL 127

  Fly   334 GRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYW 398
            .||   |.:.|      :|....|||||||||..||.|||:|||||||....:|...|.::||:|
 Worm   128 SRL---TPNLA------NYDPVLNEYFFDRHPGVFSMILNYYRTGKLHYPTNVCGPLFEEELEFW 183

  Fly   399 GVDELYLESCCQHKYHQRKEN-----VHEEMRKEAESLRQRD-------EEEFGEGKCAEYQKY- 450
            |:|...:|.||...|.|.::.     |.|.:..:.:...|.:       |:::..|..:::|:. 
 Worm   184 GLDANQVEPCCWMTYTQHRDTQDTLAVIESLDLDGDPPTQEEIAKKFGWEDDYYTGNMSQWQRLK 248

  Fly   451 --LWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLP--QLQHID------------NGTPQ 499
              :|.|.::|.:|..||||:|::|:|:::|.:...|.|.|  ::..||            ||...
 Worm   249 PRVWALFDEPWSSKYARVISVVNIIFVIISIVCFCLKTHPSFRIPDIDISTTMGNFSAPLNGVQM 313

  Fly   500 DN-----------PQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLF 553
            :|           |....||.:...||:.|::.|....|:...|.:..:|:||.:|.:.:::...
 Worm   314 NNIYVGKTATRAHPSFFYVELLSNIWFSGEFLTRMVFCPNVATFLRTPVNLIDFIATVSFYIDWA 378

  Fly   554 LLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGV 618
            |..|...:.      |..|:.|.|:||||:.||.:|||||:.|..|.:.|.:||.||:.|:.:|:
 Worm   379 LDRTLSGSN------RDSVEFFSIIRILRLFKLTQHSTGLKILIQTFKASAQELFLLVFFVLLGI 437

  Fly   619 LIFSSLAYFAEKDE--KDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVI 681
            :||::|.|:||:.|  ::.:|.|||...|||.||:.|:|:||:.|.|:||:::|:||.:.|||.|
 Worm   438 VIFAALVYYAERVEHNEENQFSSIPVGLWWAVITICTIGFGDLVPQTSLGRLVGSVCALMGVLTI 502

  Fly   682 ALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDT 746
            |||:|:||:|||.||.:...|.|..|:|.         .::..|.|......:.:..:|..:...
 Worm   503 ALPVPVIVSNFAMFYSHAQARSKLPKKRR---------RVLQPHEIKPVVGRSTTAVMISALTQR 558

  Fly   747 GKQTNVVHPKGKRQSTPNIGRQTLDVQSAPGHN----LSQTDGNSTEGESTSGRNPATT 801
            |       |.....|.|:.|...    ||..:|    :...||::...:.:..:|..||
 Worm   559 G-------PVSGGGSNPSDGGPL----SAFSNNTPLLVCPPDGSTKPKKLSQNKNGGTT 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 50/106 (47%)
BTB_2 309..408 CDD:280393 47/98 (48%)
Ion_trans 501..700 CDD:278921 82/211 (39%)
Ion_trans_2 613..696 CDD:285168 42/84 (50%)
shw-1NP_001022089.1 BTB_Shaw-like 100..211 CDD:349723 52/119 (44%)
Ion_trans 264..521 CDD:366146 97/262 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.