DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and Kcnq1

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_006508551.2 Gene:Kcnq1 / 16535 MGIID:108083 Length:688 Species:Mus musculus


Alignment Length:611 Identity:132/611 - (21%)
Similarity:215/611 - (35%) Gaps:200/611 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   466 VIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDK- 529
            :|.::.::|.|||||       .|...:..||      |..:|.|.:.:|..||::|..::..: 
Mouse   150 LIVLVCLIFSVLSTI-------EQYAALATGT------LFWMEIVLVVFFGTEYVVRLWSAGCRS 201

  Fly   530 -----W---KFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKL 586
                 |   :|.:..::||||:.::...|.|.:  .:|........:|.:    |.::|||:|.:
Mouse   202 KYVGIWGRLRFARKPISIIDLIVVVASMVVLCV--GSKGQVFATSAIRGI----RFLQILRMLHV 260

  Fly   587 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS-LAYFAEKDEKD----TKFVSIPETFWW 646
            .|.....:.||..:....:|| :..|::....||||| ..|.||||..:    .:|.|..:..||
Mouse   261 DRQGGTWRLLGSVVFIHRQEL-ITTLYIGFLGLIFSSYFVYLAEKDAVNESGRIEFGSYADALWW 324

  Fly   647 AGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRR-- 709
            ..:|:||:||||..|.|.:||.|.:...:..:...|||..|:.:.|| ....|.:|:|...|:  
Mouse   325 GVVTVTTIGYGDKVPQTWVGKTIASCFSVFAISFFALPAGILGSGFA-LKVQQKQRQKHFNRQIP 388

  Fly   710 ---------------EALDRA---------KREGSIVSFHHINLKDAFAK----SMDLIDVIVDT 746
                           |..|.|         .|..:::|......|....|    .:|..:.:...
Mouse   389 AAASLIQTAWRCYAAENPDSATWKIYVRKPARSHTLLSPSPKPKKSVMVKKKKFKLDKDNGMSPG 453

  Fly   747 GKQTNVVH-----PKGKRQSTPNIGRQTLDVQSAP-------GHNL---SQTDGNSTEGESTSGR 796
            .|..||.|     |:.:|....:|......|:.:|       .|.|   |..:....|||:.  .
Mouse   454 EKMFNVPHITYDPPEDRRPDHFSIDGYDSSVRKSPTLLEVSTPHFLRTNSFAEDLDLEGETL--L 516

  Fly   797 NPATTGTGCYKNYDHVANLRNSNLHNR---------------------RGSSSEQDAVPPYSFDN 840
            .|.|          ||:.||:   |:|                     |.....:|.:..||..:
Mouse   517 TPIT----------HVSQLRD---HHRATIKVIRRMQYFVAKKKFQQARKPYDVRDVIEQYSQGH 568

  Fly   841 PNARQTSMMAMESYRREQQAL----------------------------------LQQQ----QQ 867
            .|   ..:...|..||..|::                                  |.|:    ..
Mouse   569 LN---LMVRIKELQRRLDQSIGKPSLFIPISEKSKDRGSNTIGARLNRVEDKVTQLDQRLVIITD 630

  Fly   868 QQQQMLQMQQIQQKAPNGNGGATGGGVANNLAMVAASSAATAVATATNASNASNTAPGSEGAEGG 932
            ...|:|.|||             ||...|:.:.|.||:                           
Mouse   631 MLHQLLSMQQ-------------GGPTCNSRSQVVASN--------------------------- 655

  Fly   933 GDGDGGGVDDDNLSQAKGLPIQMMIT 958
               :||.::.:....:..||....:|
Mouse   656 ---EGGSINPELFLPSNSLPTYEQLT 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720
Ion_trans 464..700 CDD:459842 70/247 (28%)
Kcnq1XP_006508551.2 Ion_trans 149..378 CDD:459842 71/248 (29%)
KCNQ_channel <530..636 CDD:460954 13/108 (12%)
Blue background indicates that the domain is not in the aligned region.

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