DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and Kcns1

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:NP_446406.1 Gene:Kcns1 / 117023 RGDID:621524 Length:497 Species:Rattus norvegicus


Alignment Length:540 Identity:189/540 - (35%)
Similarity:294/540 - (54%) Gaps:86/540 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 MIAQSKAVNSRV---------SINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYS 353
            |:::.....|||         .:||||||..:..|.|.|.|.||||||:...:.|....|||||.
  Rat     1 MVSEFPGPGSRVPWRPRDEALRVNVGGVRRLLSARALARFPGTRLGRLQAAVSEEQARRLCDDYD 65

  Fly   354 LADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKE 418
            .|..|::|||||..|..:|:|||||.||::||:||.||..:.:|||:.|..|.:||:.:|.:|:.
  Rat    66 AAAREFYFDRHPGFFLGLLHFYRTGHLHVLDELCVFAFGQEADYWGLGENALATCCRARYLERRV 130

  Fly   419 NVHEEMRKEAE------------SLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVIS 471
            .......::::            |..||:...:|..:|...::.||..:|.|..|..:::.:.:|
  Rat   131 TRPRAWDEDSDAPSSVDPCPDEISDVQRELARYGAARCGRLRRRLWLTMENPGYSLPSKLFSCVS 195

  Fly   472 ILFIVLSTIALTLNTLPQLQHIDNGTP-------------QDNPQLAMVEAVCITWFTLEYILRF 523
            |..::.|..|:.:::||:.|..:....             :|:|.|..:|..||.||:.|...|.
  Rat   196 IGVVLASIAAMCIHSLPEYQAREAAAAVAAVAAGRSAEDVRDDPVLRRLEYFCIAWFSFEVSSRL 260

  Fly   524 SASPDKWKFFKGGLNIIDLLAILPYFVSLF---LLETNKNAT-DQFQDVRRVVQVFRIMRILRIL 584
            ..:|....||...||:||::::||::::|.   .|...:.|: ::..|:.:||||||:|||.|:|
  Rat   261 LLAPSTRNFFCHPLNLIDIVSVLPFYLTLLAGAALGDRRGASGEELGDLGKVVQVFRLMRIFRVL 325

  Fly   585 KLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGI 649
            |||||||||:|||.||::||:|:|:|:|:||:||.:||.:||.||  ||:..|.:||..:||..:
  Rat   326 KLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGVAYTAE--EKNVGFDTIPACWWWGTV 388

  Fly   650 TMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDR 714
            :||||||||:.|.|..||:..:.|.:.|:||:||||.||.|.|:.||    ||:|||        
  Rat   389 SMTTVGYGDVVPETVAGKLAASGCILGGILVVALPITIIFNKFSHFY----RRQKAL-------- 441

  Fly   715 AKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDVQSAPGHN 779
               |.::.|......:|..:....:.||.::|.::|:                            
  Rat   442 ---EAAVRSSGQREFEDLLSSVDGVSDVSLETSRETS---------------------------- 475

  Fly   780 LSQTDGNSTEGESTSGRNPA 799
               .:|.||:.|:.:...||
  Rat   476 ---QEGRSTDLETQAPSEPA 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720 54/116 (47%)
Ion_trans 464..700 CDD:459842 104/252 (41%)
Kcns1NP_446406.1 BTB_POZ 21..126 CDD:453885 51/104 (49%)
Ion_trans 188..439 CDD:459842 106/256 (41%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 392..397 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 464..497 10/60 (17%)

Return to query results.
Submit another query.