DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and Kcnk4

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_006230696.1 Gene:Kcnk4 / 116489 RGDID:621449 Length:423 Species:Rattus norvegicus


Alignment Length:147 Identity:37/147 - (25%)
Similarity:55/147 - (37%) Gaps:63/147 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   587 ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL----AYFAEKDEKDTK----------- 636
            |..||.|.:|          |.|::|:|..|.|:|.:|    ....:||.:|.:           
  Rat    26 AMRSTTLLAL----------LALVLLYLVSGALVFQALEQPHEQQVQKDLEDGRDQFLKDHPCVS 80

  Fly   637 ------FVSI----------PETFW---------W--------AGITMTTVGYGDIYPTTALGKV 668
                  |:.:          |||.|         |        :|..:||:|||:|    ||...
  Rat    81 QKNLEGFIKLVAEALGGGANPETSWTNSSNHSSAWNLGSAFFFSGTIITTIGYGNI----ALHTD 141

  Fly   669 IGTVCCICGVLVIALPI 685
            .|.:.||...|| .:|:
  Rat   142 AGRLFCIFYALV-GIPL 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720
Ion_trans 464..700 CDD:459842 37/147 (25%)
Kcnk4XP_006230696.1 Ion_trans_2 <111..169 CDD:462301 16/52 (31%)
Ion_trans_2 207..285 CDD:462301
Blue background indicates that the domain is not in the aligned region.

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