DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and LOC100537815

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_003198877.1 Gene:LOC100537815 / 100537815 -ID:- Length:493 Species:Danio rerio


Alignment Length:479 Identity:174/479 - (36%)
Similarity:262/479 - (54%) Gaps:91/479 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 RVSINVGGVRHEVLWRTLERLPHTRLG----RLRECTTHEAIVELCDDYSLADNEYFFDRHPKSF 368
            ||.||:.|:|.|...:||.:.|.|.||    |:|.             :....|||||||:..||
Zfish    33 RVVINISGLRFETQLKTLSQFPETLLGDPKKRMRY-------------FDPLRNEYFFDRNRPSF 84

  Fly   369 SSILNFYRT-GKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLR 432
            .:||.:|:: |:|.....:.:..||:::.::   ||..|:.              |:.:|.|...
Zfish    85 DAILYYYQSGGRLRRPVNVTLDVFSEEIRFY---ELGDEAI--------------EIFREDEGFI 132

  Fly   433 QRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQ------ 491
            :.:|....:.   |:||.:|.|.|.|.:|..||:||:||::.|::|.::..|.|||..:      
Zfish   133 KEEERPLPDN---EFQKQVWLLFEYPESSGPARIIAIISVMVILISIVSFCLETLPIFRSDEEEM 194

  Fly   492 -----HIDNGTPQ------DNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAI 545
                 :::|.|..      .:| ..::|.:||.||:.|:::||.|.|.|..||...:|:||::||
Zfish   195 HKVPVNVNNSTTSYTSTYFTDP-FFILETLCIIWFSFEFLVRFFACPSKASFFVNIMNMIDVVAI 258

  Fly   546 LPYFVSLFLLETNKNATDQFQDVR----RVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKE 606
            :|||::|. .|..:.|.|..|..:    .:::|.|::|:.||.||:|||.|||.||.||:.|.:|
Zfish   259 IPYFITLG-TELAEKAEDGQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRE 322

  Fly   607 LGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGT 671
            ||||:.||.:||::|||..||||.||.:::|.|||:.||||.::||||||||:.|||..||::|:
Zfish   323 LGLLIFFLFIGVILFSSAVYFAEADEPESQFYSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGS 387

  Fly   672 VCCICGVLVIALPIPIIVNNFAEFYKNQMRRE-----------KALKRREALDRAKREGSIVS-- 723
            :|.|.|||.||||:|:||:||..||..:...|           ||..:.|.  :..|.||.:|  
Zfish   388 LCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVNVPKADSQEEL--KGSRSGSTISKS 450

  Fly   724 ---------------FHHINLKDA 732
                           |...|||.|
Zfish   451 DYMEIQEGVNNSNEDFQEENLKTA 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 33/111 (30%)
BTB_2 309..408 CDD:280393 33/103 (32%)
Ion_trans 501..700 CDD:278921 101/202 (50%)
Ion_trans_2 613..696 CDD:285168 49/82 (60%)
LOC100537815XP_003198877.1 BTB_2 34..123 CDD:308049 33/118 (28%)
Ion_trans 161..415 CDD:306908 115/255 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.