DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcnc1

DIOPT Version :10

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_031756512.1 Gene:kcnc1 / 100497402 XenbaseID:XB-GENE-996920 Length:644 Species:Xenopus tropicalis


Alignment Length:211 Identity:42/211 - (19%)
Similarity:64/211 - (30%) Gaps:74/211 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 SYHRNLAHRSFKLP---------KWLEYPLAYFAVFALQ--------GDPLDWVSIHRFHHQFTD 138
            |||: :.|...||.         ||..|...:..:...:        |...:|.|....|.:...
 Frog   189 SYHK-IIHTEEKLCICEECGKTFKWFSYLTKHKRIHTGEKPYKCEECGKAFNWCSSLTKHKRIHT 252

  Fly   139 SDRDPHSPIEGFWFSHVWWICDTRYIKYKCGGRNNVMDLKQQWFYW---FLRMTIGFHVLMFWTV 200
            .:: |:.             |:      :||          :.|:|   |:|.. ..|.      
 Frog   253 GEK-PYK-------------CE------ECG----------KAFHWCSPFVRHK-KIHT------ 280

  Fly   201 LYLYGGLPYLTCGGGVGGVIGYHVTWLVNSACHIWGSRSWKTKDTSRNVWWLSLFTMGESWHNNH 265
                |..|| || ...|.....|.....:...|. |.:.:|.|:..:.....||.|:.|..|...
 Frog   281 ----GEKPY-TC-EDCGRAFNRHSHLTKHKTIHT-GKKPYKCKECGKAFNHCSLLTIHERTHTGE 338

  Fly   266 ---------HAFESSA 272
                     .||.||:
 Frog   339 KPYKCEECGKAFNSSS 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB_POZ_Shab-like 306..414 CDD:349720
Ion_trans 464..700 CDD:459842
kcnc1XP_031756512.1 Ion_trans 259..516 CDD:459842 28/126 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.