DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shab and kcns3

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_031758930.1 Gene:kcns3 / 100497261 XenbaseID:XB-GENE-952059 Length:490 Species:Xenopus tropicalis


Alignment Length:452 Identity:196/452 - (43%)
Similarity:304/452 - (67%) Gaps:20/452 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 QSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHP 365
            ::|.....|.:||||.:..|..:||.|.||||||:|..|.:.|||:||||||::||.||:|||:|
 Frog     9 RTKNEEELVKLNVGGFKQSVDQKTLLRFPHTRLGKLLNCRSEEAILELCDDYNVADKEYYFDRNP 73

  Fly   366 KSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEE------- 423
            ..|..|||||.|||||:::|:||.:||.::||||::||:::|||.:||.::||.:.|:       
 Frog    74 SLFRYILNFYYTGKLHVMEELCVFSFSQEIEYWGINELFIDSCCSNKYQEKKEIIAEKDWDQKSD 138

  Fly   424 ------MRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIAL 482
                  ...:..|:.:|:.|.|...|..:.::.:|..||.|..|.:|::.|:.|:..::.|.:|:
 Frog   139 IISLGSSSSDQSSVFERELEMFDTLKFGDIRRKIWIRLENPAYSLSAKLFAIASLSVVLTSIVAM 203

  Fly   483 TLNTLPQLQHID-NGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAIL 546
            .::::|:.:.:| |....::|.||:||.|||.|||.|.::|...:|.:.||:|..:||||.::|:
 Frog   204 CIHSMPEFKKLDANDRELEDPVLAVVEIVCIIWFTSELVIRLIVAPSQKKFWKNPMNIIDFVSII 268

  Fly   547 PYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLM 611
            |::.:| :::.|....:..:::.:|||:.|:|||.|||||||||.||:|||.||::||.|:|||:
 Frog   269 PFYATL-VVDVNDEENEGIENMGKVVQILRLMRIFRILKLARHSVGLRSLGATLKHSYHEVGLLL 332

  Fly   612 LFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCIC 676
            ||||:|:.|||.|.|:.||||..:...|||..:|||.|:||||||||.:|.|..||::||||.||
 Frog   333 LFLAVGISIFSVLVYYVEKDEDQSGLHSIPMCWWWATISMTTVGYGDTHPVTLFGKLVGTVCIIC 397

  Fly   677 GVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMD 738
            |:||:||||.||.|.|:::|:.|    ||:......|..::: ......:.|::|.:|:.|:
 Frog   398 GILVVALPITIIFNKFSKYYQKQ----KAIDVDGCNDDEQKD-KFNDLPYFNIRDIYARRMN 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 61/106 (58%)
BTB_2 309..408 CDD:280393 56/98 (57%)
Ion_trans 501..700 CDD:278921 105/198 (53%)
Ion_trans_2 613..696 CDD:285168 49/82 (60%)
kcns3XP_031758930.1 BTB_POZ_KCNS3 15..122 CDD:349735 60/106 (57%)
Ion_trans 185..421 CDD:395416 114/240 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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