DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcng4

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_002934997.1 Gene:kcng4 / 100497160 XenbaseID:XB-GENE-985941 Length:506 Species:Xenopus tropicalis


Alignment Length:431 Identity:170/431 - (39%)
Similarity:268/431 - (62%) Gaps:18/431 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 VSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILN 373
            :.|||||:::.:.|.||:..|.||||:||.|:::|.|:::|||:....||:||||:|.:||.|::
 Frog    62 IIINVGGIKYLMPWSTLDEFPMTRLGKLRFCSSYEEIIQICDDFDEDTNEFFFDRNPCAFSMIVS 126

  Fly   374 FYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRD--- 435
            |...|||.::.|||.|:|.|:|.|||::|..||.||..|..|:.|.: .|:|||.|:.|.|:   
 Frog   127 FLAAGKLRLLREMCALSFQDELTYWGIEESKLERCCLRKLFQKLEEL-AEIRKEEEAQRNRETIC 190

  Fly   436 --EEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQ-HIDNG- 496
              |:....|.|   ...|.:::|.|.:....:|.|.:||:|:..:.|.|.::|:|.|: ..|.| 
 Frog   191 VLEDNTKVGHC---MGKLRDMVENPQSGIPGKVFACLSIIFVATTAINLCVSTMPDLRAEEDRGE 252

  Fly   497 TPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNK-- 559
            ..|....:.::|.:|:.||:||:.|||..:..|.:||||.|||||:||||||:|||.:.:..|  
 Frog   253 CSQMCYNIFIIETICVAWFSLEFFLRFIQAKSKCQFFKGPLNIIDVLAILPYYVSLIVEDEQKTV 317

  Fly   560 ---NATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIF 621
               ::....:.:..|::|.|.:|||.:::|||||.|||:||.|:|...:|.|||:|||.:.|.:|
 Frog   318 DKPSSNSYLEKIGLVLRVLRALRILYVMRLARHSLGLQTLGLTVRRCTREFGLLLLFLCVAVTLF 382

  Fly   622 SSLAYFAEKD-EKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPI 685
            :.|.:.||.: .:..:|.|:|.::|||.|:||||||||:.|.:..|:|:.....:.|:|::|.|.
 Frog   383 APLVHLAENEMGRCQEFTSVPASYWWAIISMTTVGYGDMVPRSIPGQVVALSSILSGILIMAFPA 447

  Fly   686 PIIVNNFAEFYKNQMRREKALKRR-EALDRAKREGSIVSFH 725
            ..|.:.|:..|....|.::.|:.| ..|..|.:.|...:|:
 Frog   448 TSIFHTFSRCYSELKREQERLQSRLMRLKDANQSGESDTFN 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 51/106 (48%)
BTB_2 309..408 CDD:280393 48/98 (49%)
Ion_trans 501..700 CDD:278921 84/204 (41%)
Ion_trans_2 613..696 CDD:285168 31/83 (37%)
kcng4XP_002934997.1 BTB_POZ_KCNG4 59..170 CDD:349730 52/107 (49%)
Ion_trans 219..462 CDD:366146 97/242 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

Return to query results.
Submit another query.