DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shab and kcna2

DIOPT Version :9

Sequence 1:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster
Sequence 2:XP_031752644.1 Gene:kcna2 / 100496794 XenbaseID:XB-GENE-991578 Length:499 Species:Xenopus tropicalis


Alignment Length:525 Identity:184/525 - (35%)
Similarity:274/525 - (52%) Gaps:101/525 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 SISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLWRTLER 327
            :::.|.||...|...|..|.::.        |||     ......||.||:.|:|.|...:||.:
 Frog     2 TVATGDPTDETSALPGHPQDSYD--------PEP-----DHECCERVVINISGLRFETQLKTLSQ 53

  Fly   328 LPHTRLG----RLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRT-GKLHIVDEMC 387
            .|.|.||    |:|.             :....|||||||:..||.:||.:|:: |:|.....:.
 Frog    54 FPETLLGDPKKRMRY-------------FDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP 105

  Fly   388 VLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLW 452
            :..||:::.::.:.|..:                 |:.:|.|...:.:|....:.   ||||.:|
 Frog   106 LDIFSEEIRFYELGEEAM-----------------EIFREDEGFIKEEERPLPDN---EYQKQVW 150

  Fly   453 ELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHID--------NGTPQDNPQLA---- 505
            .|.|.|.:|..||:||:||::.|::|.::..|.|||..:..:        |..|..|..:.    
 Frog   151 LLFEYPESSGPARIIAIISVMVILISIVSFCLETLPVFRDENEDMHGSGVNYYPYSNSTVRYQKS 215

  Fly   506 --------MVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSL--FLLETNKN 560
                    :||.:||.||:.|:::||.|.|.|..||...:||||::||:|||::|  .|.|..::
 Frog   216 NTFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKTED 280

  Fly   561 ATDQFQDVR-RVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 624
            .....|.:. .:::|.|::|:.||.||:|||.|||.||.||:.|.:|||||:.||.:||::|||.
 Frog   281 GQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSA 345

  Fly   625 AYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIV 689
            .||||.||:|::|.|||:.||||.::||||||||:.|||..||::|::|.|.|||.||||:|:||
 Frog   346 VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV 410

  Fly   690 NNFAEFYKNQMRREKAL------------------KRREALDRAK------REG---SIVSFHHI 727
            :||..||..:...|:..                  |.|.|...:|      :||   |...|...
 Frog   411 SNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPDLQKSRSASTLSKSDYMEIQEGVNHSNEDFREK 475

  Fly   728 NLKDA 732
            |||.|
 Frog   476 NLKTA 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShabNP_001189037.1 BTB 309..416 CDD:197585 31/111 (28%)
BTB_2 309..408 CDD:280393 31/103 (30%)
Ion_trans 501..700 CDD:278921 103/213 (48%)
Ion_trans_2 613..696 CDD:285168 50/82 (61%)
kcna2XP_031752644.1 BTB_POZ 33..159 CDD:365784 44/158 (28%)
Ion_trans 162..420 CDD:395416 117/257 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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